PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0392s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 765aa    MW: 87402 Da    PI: 9.7722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0392s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.3e-13704743142
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                             r rWT+eE++++++a k++G   W++I +++g ++t+ q++s
  SapurV1A.0392s0110.1.p 704 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAAQIRS 743
                             78******************88.*********.********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF009313.6E-16141225IPR002182NB-ARC
SuperFamilySSF525407.43E-9142201IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520582.21E-20248658IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.5E-9280466IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.5E-5467666IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF466892.62E-11698744IPR009057Homeodomain-like
PROSITE profilePS5129414.901699753IPR017930Myb domain
TIGRFAMsTIGR015571.0E-10702743IPR006447Myb domain, plants
SMARTSM007176.2E-10703751IPR001005SANT/Myb domain
PfamPF002491.2E-11704743IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-8704744IPR009057Homeodomain-like
CDDcd001674.33E-8706744No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MAKLLQQHSN GNAAGWAPPS VQKRWLLTLL IMLSISTLIA LLIESAFDSC DPPHPPNFHV  60
DASNQPVKDF PKSIKTAPSA LSFMKSKVVL LKFVLKVVIQ DQKIMTKIMK TTISLADFSR  120
PPSNFAVKGK LDFWNDRSRR MGLPLTAKLL GGLLKFKTNV DEWRKILNNN IRDLRDDRGL  180
PVLKVSYYCL PSHLKPCFAY CAIFPQGYEF CKKDVVLLWI ADGFLFAFGG NKKMKKAGYN  240
DNSLLFVMRD LTNDLTKFVS AEFAVCLDDG DSWKVSKKTR HLSYARTRSE DLNRLVSFDK  300
VPNLRTILLI SRLFLANMSD EEISDFLRRF QCLRVLSLLR GGKLPNSIDN LKQLRYLNIS  360
GSSEHRLLET LCTLQILILR EYNNLMELPT NLMKLTNLYH LDIKGTRLQQ MGKLSKHHIL  420
TDFFVGRQNG SSIKELGKLK CLKGKLHIWM FQNVDVALGA NLEGMRDLKK LDLSNDAYDF  480
LDEHMIHQLK PRVNVCCLVI VGYGGSRFPT CIPFKSLESL TFKRMLQWCE WIPDVAKSDR  540
DKSFSCLQVF CISECPKLKS TLPNHLSSLK QLMITNCSHF VLSLPRLTTI KKMSLRDTSN  600
DHPDHMVKLE KLNYDWQSLI VQSYGAGEWL NLEDLSLFDC LNLKSVDCSL PSLVTLKLSR  660
CGELESFLAL GNGILQSATL QNATDHQLKE EFSSRKPYTI TKQRERWTEE EHKKFLEALK  720
LYGRAWRRIE EHVGTKTAAQ IRSQNSSLRF TALIPTSALY YHNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C3e-11142489357732Disease resistance RPP13-like protein 4
6j5t_F3e-11142489357732Disease resistance RPP13-like protein 4
6j5t_G3e-11142489357732Disease resistance RPP13-like protein 4
6j5t_L3e-11142489357732Disease resistance RPP13-like protein 4
6j5t_O3e-11142489357732Disease resistance RPP13-like protein 4
6j5u_A3e-11142489357732Disease resistance RPP13-like protein 4
6j5v_A3e-11142489357732Disease resistance RPP13-like protein 4
6j5w_A3e-11142489357732Disease resistance RPP13-like protein 4
6j6i_C3e-11142489357732Disease resistance RPP13-like protein 4
6j6i_F3e-11142489357732Disease resistance RPP13-like protein 4
6j6i_G3e-11142489357732Disease resistance RPP13-like protein 4
6j6i_L3e-11142489357732Disease resistance RPP13-like protein 4
6j6i_O3e-11142489357732Disease resistance RPP13-like protein 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0392s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038434.10.0PREDICTED: putative disease resistance RPP13-like protein 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-24MYB_related family protein