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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0388s0180.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 144aa MW: 15784.1 Da PI: 9.1958 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.2 | 4e-05 | 33 | 72 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + a++L +A+eYI+ L SapurV1A.0388s0180.3.p 33 KERKEKLGERIVALQQLVSPY-----GKTDTASVLMEAMEYIQFL 72 66788889999999**99999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-10 | 22 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.42 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-12 | 29 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0016 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-5 | 33 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MMENKRSPCS VDHASLTSLA TKRHKADFSI STKERKEKLG ERIVALQQLV SPYGKTDTAS 60 VLMEAMEYIQ FLHEQVQVLS APYLQGASTA QMQELGQYSL RNKGLCLVPT SCTAGIARSN 120 GADLWAPIKS PSPKFNKDIS PFH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0388s0180.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006376438.1 | 1e-103 | transcription factor bHLH153 | ||||
Swissprot | Q7XJU2 | 8e-63 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | U5FT80 | 1e-101 | U5FT80_POPTR; BHLH family protein | ||||
STRING | POPTR_0013s13050.1 | 1e-102 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 4e-65 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0388s0180.3.p |
Publications ? help Back to Top | |||
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