PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0379s0300.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C3H

Protein Properties

Length: 687aa MW: 75828.6 Da PI: 6.7216

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0379s0300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.5e-06	100	125	4	26
---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 4 elCrffartG...tCkyGdrCkFaHg 26 +lC+ a+tG C+y ++C+F+H+ SapurV1A.0379s0300.1.p 100 SLCPELAKTGnvdSCPYKNNCRFNHD 125 79***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.958	96	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.16	140	166	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	4.8E-63	344	573	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	3.85E-57	348	647	No hit	No description
CDD	cd02801	2.12E-83	348	569	No hit	No description
Pfam	PF01207	3.0E-44	352	605	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	418	436	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MAEPPAELTS PNSNPTQEQQ KPTATPEQLV AKSIAPVKPQ FLRPPPSRTS QNDTASSTVS 60 DSNNNISKSN TNTTSVVAKE KKSKRQLKRE RQQEKKSAVS LCPELAKTGN VDSCPYKNNC 120 RFNHDLEAFK AQKPEDLEGE CPFVDGEGSC CPYGLACRFY GTHKGNDGVR NGKKQLSEIN 180 GLSKDVQKLL WKNKMKFLKA DSVLKSLGLM GPGKSKVKKV DEEEVEKVVD ANDSHGTNEN 240 GCGDGGNESA GKLDCTAEEL AGDDVDGALT DEVRPQKKAK AAVEGNGCSG EEVNGSGIPE 300 KDIEINCPLE TEPELVTNKL EVIADSVETD GSLKLHPREK KLIDFRGKLF LAPLTTVGNL 360 PFRRVCKTLG ADGQASEWAL LRRHSSEDLF GVQICGAYPD TVTRTAELID QECKVDFIDI 420 NMGCPIDIVV NKGAGSSLLT KPMRMKSIIE ATSGTVEKPI TVKVRTGYFE GKNRIDSLIV 480 DIGKWGASAV TIHGRSRQQR YSKLADWDYI YQCARKSPDS LQVLGNGDVF SFVDWNKHKS 540 DCPELSSCMI ARGALIKPWI FTEIKEQRHW DISSGERLNI LKDYVRSGLE HWGSDTKGVE 600 TTRHFLLEWL SYTYRYVPVG LLDVIPQRLN WRPPSYYGRD DLETLMASDS AADWIRISEM 660 LLGKVPDSFT FAPKHKSNAY DRAENG*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MAEPPAELTS PNSNPTQEQQ KPTATPEQLV AKSIAPVKPQ FLRPPPSRTS QNDTASSTVS  60
DSNNNISKSN TNTTSVVAKE KKSKRQLKRE RQQEKKSAVS LCPELAKTGN VDSCPYKNNC  120
RFNHDLEAFK AQKPEDLEGE CPFVDGEGSC CPYGLACRFY GTHKGNDGVR NGKKQLSEIN  180
GLSKDVQKLL WKNKMKFLKA DSVLKSLGLM GPGKSKVKKV DEEEVEKVVD ANDSHGTNEN  240
GCGDGGNESA GKLDCTAEEL AGDDVDGALT DEVRPQKKAK AAVEGNGCSG EEVNGSGIPE  300
KDIEINCPLE TEPELVTNKL EVIADSVETD GSLKLHPREK KLIDFRGKLF LAPLTTVGNL  360
PFRRVCKTLG ADGQASEWAL LRRHSSEDLF GVQICGAYPD TVTRTAELID QECKVDFIDI  420
NMGCPIDIVV NKGAGSSLLT KPMRMKSIIE ATSGTVEKPI TVKVRTGYFE GKNRIDSLIV  480
DIGKWGASAV TIHGRSRQQR YSKLADWDYI YQCARKSPDS LQVLGNGDVF SFVDWNKHKS  540
DCPELSSCMI ARGALIKPWI FTEIKEQRHW DISSGERLNI LKDYVRSGLE HWGSDTKGVE  600
TTRHFLLEWL SYTYRYVPVG LLDVIPQRLN WRPPSYYGRD DLETLMASDS AADWIRISEM  660
LLGKVPDSFT FAPKHKSNAY DRAENG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	3e-24	345	578	27	266	tRNA-dihydrouridine synthase B
6ei9_B	3e-24	345	578	27	266	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0379s0300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM399254	0.0	KM399254.1 Populus trichocarpa FMN-linked oxidoreductases superfamily protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313751.2	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	B9HRE5	0.0	B9HRE5_POPTR; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	POPTR_0009s12840.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10889	12	12

Link Out ? help Back to Top
Phytozome	SapurV1A.0379s0300.1.p

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]