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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0377s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 10604.1 Da PI: 9.7982 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.7e-08 | 34 | 72 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++E++l+++ ++ G + W++Ia +++ gR ++++ +w SapurV1A.0377s0050.1.p 34 MSEQEEDLIYRMYRLVGER-WDLIAGRIP-GRKAEEIERFW 72 79*****************.*********.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.2E-5 | 30 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.71E-5 | 33 | 72 | No hit | No description |
Pfam | PF00249 | 2.1E-7 | 34 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.89E-7 | 35 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 35 | 73 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MESMDRRRRR RRQAKINISE SEEVSSIEWE FINMSEQEED LIYRMYRLVG ERWDLIAGRI 60 PGRKAEEIER FWIMKHREGF AEKRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 11 | RRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0377s0050.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP723393 | 3e-74 | KP723393.1 Populus tremula x Populus tremuloides clone INRA 353-38 R3 MYB repressor protein (MYB179) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001911.1 | 1e-45 | PREDICTED: transcription factor TRY-like | ||||
Swissprot | Q8GV05 | 4e-41 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A178UFU9 | 1e-38 | A0A178UFU9_ARATH; TRY | ||||
STRING | AT5G53200.1 | 2e-39 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3583 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 1e-28 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0377s0050.1.p |