PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0369s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 648aa    MW: 73801.9 Da    PI: 7.9526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0369s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48e-09461502240
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                             ++W+ eE ell ++++++++g   +W+ I++++g+gR+ +++
  SapurV1A.0369s0240.1.p 461 KPWSREEIELLRKGIQKYPKGtsrRWEVISEYIGTGRSVEEI 502
                             69***********************************99876 PP
2Myb_DNA-binding28.53.6e-09590636347
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                              W++  +  lv+a k ++++   +W+++a+ ++ g+t +qc+ ++ ++
  SapurV1A.0369s0240.1.p 590 VWSAVQERALVQALKTFPKEttqRWERVAAAVP-GKTVNQCRRKLTSL 636
                             6********************************.*********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.2E-2093197IPR001623DnaJ domain
SuperFamilySSF465653.79E-1994174IPR001623DnaJ domain
SMARTSM002718.4E-1395170IPR001623DnaJ domain
PROSITE profilePS5007617.92396178IPR001623DnaJ domain
PfamPF002264.5E-1796175IPR001623DnaJ domain
CDDcd062572.18E-1296167IPR001623DnaJ domain
PRINTSPR006253.9E-8101119IPR001623DnaJ domain
PRINTSPR006253.9E-8119134IPR001623DnaJ domain
PRINTSPR006253.9E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.605.4E-6455502IPR009057Homeodomain-like
SuperFamilySSF466895.98E-8457503IPR009057Homeodomain-like
PROSITE profilePS512937.532458513IPR017884SANT domain
SMARTSM007179.2E-8459512IPR001005SANT/Myb domain
PfamPF002491.7E-7461502IPR001005SANT/Myb domain
CDDcd001676.98E-6462502No hitNo description
PROSITE profilePS512938.081586641IPR017884SANT domain
SMARTSM007173.3E-8587639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-5587633IPR009057Homeodomain-like
SuperFamilySSF466891.12E-8589644IPR009057Homeodomain-like
PfamPF002491.7E-7590636IPR001005SANT/Myb domain
CDDcd001675.62E-6591637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAIQTGLQLI SYSQELVDGQ PVHYSSNCLP IKAFKYEPAG HAFHSAALKL RGWEEEGIET  60
EDQKVSKDKE QSYMPSSESY STKGKKKTGS GDTQQDHYAM LGLGHLRYLA TEEQIRKSYR  120
EVALKYHPDK QAAILLAEET EAAKQAKKCE IESHFKAIQE AYEALIDPVK RRIYDSTDEF  180
DDEIPTDCAP QDFFKVFGPA FMRNGRWSVN QPIPSLGDEN TSLKEADSFY DFWYSFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARKEDYAR IRTLVDSAYK RDPRILRRKE  300
EGKAEKQRKK EAKFLAKRLQ EEEAARAAEE ERRQKEEEEK RAAEAALQQK KLKEKEKKLL  360
RKERSRLRTL SAPVLPQCVL NLGEDDVENL CMSLDIEQLR SLCDRMEGKE VLEQAKVLRD  420
ACGCDHDSGS SKLDEKKISQ QNGSLNSNGR APLSSSGKKE KPWSREEIEL LRKGIQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDTAKAF DSFLEKRNPA LSIASPLTTR  540
EEIHGTSAMQ APESSVAKIA EEESSRDTDK QKADDVVTAN GVSSSADQDV WSAVQERALV  600
QALKTFPKET TQRWERVAAA VPGKTVNQCR RKLTSLKENF RNKNSAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-2119229520123Zuotin
5dje_B7e-2119229520123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0369s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227300.0CU222730.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299170.20.0dnaJ homolog subfamily C member 2
RefseqXP_024442936.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2K2BRW20.0A0A2K2BRW2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s07310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain