PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0367s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 335aa    MW: 38893.6 Da    PI: 6.3428
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0367s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.12.4e-5571361129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeelv++yL+kkv++++++l ++ik+vd+yk+ePwdL++  ++ a e +ewyfFs++dkky+tg+r+nrat +g+Wk
  SapurV1A.0367s0210.1.p   7 VPPGFRFHPTDEELVHYYLRKKVNSTRIDL-DFIKDVDLYKIEPWDLQElcRIGAeEVNEWYFFSHKDKKYPTGTRTNRATVAGFWK 92 
                             69****************************.99**************954544442556**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             atg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  SapurV1A.0367s0210.1.p  93 ATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                             **********.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-595156IPR003441NAC domain
PROSITE profilePS5100558.7027156IPR003441NAC domain
PfamPF023652.7E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNSFTHVPPG FRFHPTDEEL VHYYLRKKVN STRIDLDFIK DVDLYKIEPW DLQELCRIGA  60
EEVNEWYFFS HKDKKYPTGT RTNRATVAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GTPHEEGWVV CRVFKKRLPA MQKVSEHESA CWYDEQVAFL  180
HDFDSPNQNF QPELGYQFPY SCKKELDLQC QIPQDHFLQL PLLKSPKFLQ SAPTLSCNSM  240
NSAYGLDINH QANTLQSSTL TQEDHIQKIH EQMFPTIYGN SNKNHEHGVD QVTDWRVLDK  300
FVASQLSQED VIKEASVPEN ASTSTSSCQT DLWM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-49615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0367s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5999360.0AB599936.1 Populus trichocarpa PtVNS05 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442118.10.0NAC domain-containing protein 7
RefseqXP_024442119.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-133NAC7_ARATH; NAC domain-containing protein 7
TrEMBLF1T1100.0F1T110_POPTR; NAC family protein
STRINGPOPTR_0015s14770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-135NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]