PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0362s0410.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 382aa    MW: 44904.6 Da    PI: 7.4025
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0362s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS206.41.7e-6373503374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             + L+e A+a++ g+l  a++lL++++ l+s +   +++++++ f+eAL +r+++  ++    lp  ++s  n ++  ++        
  SapurV1A.0362s0410.1.p   7 NKLVESAKAIEGGNLDVAESLLKEIRCLVSTEPnIATRKVVKIFAEALVRRVNGLHPRYP--LPLVPSS--NLEDFYNY-----VFY 84 
                             689*************************9888846*******************333322..3333332..34444332.....345 PP

                    GRAS  89 PilkfshltaNqaIle.avegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                             P++ fs++t+ +aI    ++g++ +H+iDf+++ +   W  L++ Las+p+g ps+R+T ++++ s s + l++++ +L++ Ae+l+
  SapurV1A.0362s0410.1.p  85 PFYWFSYFTTAHAIHAfRISGNKPLHVIDFSVMlYTSLWYDLMRDLASQPGGLPSFRLTSIVPKLSRSFDYLQQIRCKLTRAAERLR 171
                             **************87368999*********9747899*************************9999******************** PP

                    GRAS 174 vpfefnvlvakrledl....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                             v+fe + +va++ +++    e    r++++E+++V ++++lh+ll    s+e               +++++veqeadhn+++F++r
  SapurV1A.0362s0410.1.p 172 VDFELRHVVANNAKEIieccESTVRRTREDEMIVVRWSFSLHKLL----SQE---------------DIMIIVEQEADHNGSDFMDR 239
                             *******9888766553221333335666***************9....334...............6******************* PP

                    GRAS 257 flealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                             f+++++yys++f sl e k+ r+ + +    r  ++r+i nvvaceg +r+erhe+l++W+erl +aGF+p++       + ++l+ 
  SapurV1A.0362s0410.1.p 240 FVKSFQYYSTIFHSLeEDKFYRDVDGMELWKRN-FRRQIGNVVACEGIDRVERHESLHQWQERLLQAGFHPMQQWW----NNDRLIF 321
                             ***************888888888888777777.*************************************97544....3456666 PP

                    GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + k   yr++e++g  +l+ +d pL+++S+W+
  SapurV1A.0362s0410.1.p 322 QLK---YRIQEKDGHPMLYRHDCPLLVTSVWK 350
                             666...8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.5691337IPR005202Transcription factor GRAS
PfamPF035145.7E-617350IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MADLLFNKLV ESAKAIEGGN LDVAESLLKE IRCLVSTEPN IATRKVVKIF AEALVRRVNG  60
LHPRYPLPLV PSSNLEDFYN YVFYPFYWFS YFTTAHAIHA FRISGNKPLH VIDFSVMLYT  120
SLWYDLMRDL ASQPGGLPSF RLTSIVPKLS RSFDYLQQIR CKLTRAAERL RVDFELRHVV  180
ANNAKEIIEC CESTVRRTRE DEMIVVRWSF SLHKLLSQED IMIIVEQEAD HNGSDFMDRF  240
VKSFQYYSTI FHSLEEDKFY RDVDGMELWK RNFRRQIGNV VACEGIDRVE RHESLHQWQE  300
RLLQAGFHPM QQWWNNDRLI FQLKYRIQEK DGHPMLYRHD CPLLVTSVWK HSDPSQFSNG  360
EFPHSILFLS VMLSPYRCLC S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-211134925378Protein SCARECROW
5b3h_A6e-211134924377Protein SCARECROW
5b3h_D6e-211134924377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0362s0410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443083.10.0uncharacterized protein LOC7458894
TrEMBLA0A3N7HPP81e-98A0A3N7HPP8_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02720.11e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4035822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-67GRAS family protein