PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0359s0250.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 510aa    MW: 56819.1 Da    PI: 5.2221
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0359s0250.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.11e-1251395091374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+++Ll+cA+avs+ d ++a  l+  l +++s +g+p+qRl ay++e+L+arl  s+s++y+al++++     ss+ ++++ +++++
  SapurV1A.0359s0250.2.p 139 LKQVLLACADAVSNADIQRAAGLMHVLDQMVSVSGEPIQRLGAYMLEGLRARLELSGSKIYRALKCEAPI---SSDLMTYMGILYQI 222
                             5799*****************************************************************9...9999999******* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ kf++  aN  I eave e+r+HiiDf+i qG QW+ L+q La+Rp+gpp +RiTgv++++s   +   l  +g+rL+k+Ae++
  SapurV1A.0359s0250.2.p 223 CPYWKFAYTSANVVIREAVEYESRIHIIDFQIAQGSQWILLMQMLACRPGGPPAIRITGVDDSQSAhaRGGGLDIVGHRLSKVAESC 309
                             **************************************************************9988889999*************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfef+  va +  +++le+Lrv++gEa++Vn+ + lh+++desv++ ++rd++++++kslsP++v++veqe+++n+++F+ rf+e
  SapurV1A.0359s0250.2.p 310 NVPFEFHD-VAMDGCEVQLEHLRVQSGEAVVVNFPYVLHHMPDESVNTWNHRDRLIRMMKSLSPRIVTLVEQESNTNTKPFFPRFIE 395
                             ********.6888999*********************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             +l+yy+a+f+s++a+ +++ ++ri+ E+++++r+ivn++ace+aer+erhe l+kWr+r+++aGF+++pls+++++ +k ll++++ 
  SapurV1A.0359s0250.2.p 396 TLDYYTAMFESIAAGGSKDVKQRINAEQQCVARDIVNMIACEEAERVERHELLAKWRSRFTMAGFNQYPLSSSTTTAVKDLLKEYD- 481
                             ************99989999******************************************************************. PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + y+v+e++ +l+l W++r + + SaW+
  SapurV1A.0359s0250.2.p 482 RNYSVQERDRALYLRWRNRDMATSSAWQ 509
                             55*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.81113490IPR005202Transcription factor GRAS
PfamPF035143.5E-123139509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MYSDAGSQGT SVSFDTCLGQ FVTLESSSAT SGFVVYDSPA ASISSNRSPF SPQGSHSCIS  60
DPHHSPENIY GSPSSGSSSA DEDNILRQKL RELEISLLGP ESDITDSGSF CFVSGGYQAE  120
PSASWDWNQM MEMIPRLDLK QVLLACADAV SNADIQRAAG LMHVLDQMVS VSGEPIQRLG  180
AYMLEGLRAR LELSGSKIYR ALKCEAPISS DLMTYMGILY QICPYWKFAY TSANVVIREA  240
VEYESRIHII DFQIAQGSQW ILLMQMLACR PGGPPAIRIT GVDDSQSAHA RGGGLDIVGH  300
RLSKVAESCN VPFEFHDVAM DGCEVQLEHL RVQSGEAVVV NFPYVLHHMP DESVNTWNHR  360
DRLIRMMKSL SPRIVTLVEQ ESNTNTKPFF PRFIETLDYY TAMFESIAAG GSKDVKQRIN  420
AEQQCVARDI VNMIACEEAE RVERHELLAK WRSRFTMAGF NQYPLSSSTT TAVKDLLKEY  480
DRNYSVQERD RALYLRWRNR DMATSSAWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5214650825377Protein SCARECROW
5b3h_D1e-5214650825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0359s0250.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004506.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_011004507.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1X9QM550.0A0A1X9QM55_9ROSI; Phytochrome A signal transduction 1
STRINGPOPTR_0006s01720.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13