PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0358s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 187aa    MW: 21360.9 Da    PI: 6.9618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0358s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEd++l + ++ +G g W++ ar  g++Rt+k+c++rw++yl
  SapurV1A.0358s0050.1.p 15 KGPWTLEEDLILTNHIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62
                            79********************************************97 PP
2Myb_DNA-binding53.36.6e-1768111146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  SapurV1A.0358s0050.1.p  68 RGNITHEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111
                             7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-22765IPR009057Homeodomain-like
PROSITE profilePS5129414.2371062IPR017930Myb domain
SuperFamilySSF466891.63E-2912109IPR009057Homeodomain-like
SMARTSM007171.2E-121464IPR001005SANT/Myb domain
PfamPF002496.4E-151562IPR001005SANT/Myb domain
CDDcd001674.17E-91762No hitNo description
PROSITE profilePS5129425.52863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2466117IPR009057Homeodomain-like
SMARTSM007171.9E-1467115IPR001005SANT/Myb domain
PfamPF002499.2E-1668111IPR001005SANT/Myb domain
CDDcd001679.82E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDKTQSNSQD VEVRKGPWTL EEDLILTNHI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN  60
YLRPDLRRGN ITHEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHIKRA  120
ETFAALGSET NEQGSSGSQA SSTAELMVTD CLPTYHGDVE AFSGENIHEN YWSMEDLWSM  180
QLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0358s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4970531e-133FJ497053.1 Populus x canadensis MYBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013637.11e-117PREDICTED: myb-related protein 305-like isoform X1
SwissprotP813914e-86MYB05_ANTMA; Myb-related protein 305
TrEMBLB9IJM01e-115B9IJM0_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_186.72e-99(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-76myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]