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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0348s0040.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 478aa MW: 54534.4 Da PI: 4.2898 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.3e-52 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 ppGfrFhPtdeelv +yLkkk+ +k++el ++i+e+d+yk++P++Lp + +k+++++w+fFs+rd+ky++g r+nrat++gyWk t SapurV1A.0348s0040.3.p 17 PPGFRFHPTDEELVLYYLKKKICKKRIEL-NIIRELDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKVT 102 8****************************.99**************96446788999****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ v++ ++++vg+kktLvfy grap+g++tdWvmhey+l SapurV1A.0348s0040.3.p 103 GKDRIVVC-NSRNVGVKKTLVFYIGRAPSGQRTDWVMHEYTL 143 ********.999****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-60 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.723 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MTVTADSCLG ADDKAWPPGF RFHPTDEELV LYYLKKKICK KRIELNIIRE LDVYKWDPEE 60 LPGQSILKTG DRQWFFFSPR DRKYPNGARS NRATRQGYWK VTGKDRIVVC NSRNVGVKKT 120 LVFYIGRAPS GQRTDWVMHE YTLYEEELNR CPNVQDYYAL YKVFKKSGPG PKNGEQYGAP 180 FKEEDWADDE YPCVNGMVTP EIPVEQHNEV SLVDNVRVSD QLEPLLDDFE EIIKQIAEEP 240 APNQLQNNDF THLLSQEVVS EPAGELMTSG QHYNKYTSFN FNQSATSTLQ LHEAPEVTSS 300 PNCEEAPQLN EEDFLEIDDL IDPEPSFFST EQPAENLKFD DFDGLSELDE YDDAAMFFHG 360 MGPVDQEAVS CSYMNSYACD VINQASYQLQ PNTITNLVDY HLQPNLVANQ VDYELQPQFF 420 DSEQMNSQLW VHDHQNNALA TSESHHGILF QSTANQCRAL DEMGGLSGRK AYVNLGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-49 | 17 | 166 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-49 | 17 | 166 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-49 | 17 | 166 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-49 | 17 | 166 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-49 | 17 | 166 | 18 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-49 | 17 | 166 | 18 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0348s0040.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044815.1 | 0.0 | PREDICTED: NAC domain-containing protein 69 isoform X2 | ||||
TrEMBL | A0A2K2AJE6 | 0.0 | A0A2K2AJE6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s22180.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-116 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0348s0040.3.p |