PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0347s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 451aa    MW: 47145.7 Da    PI: 6.4344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0347s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12246291555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  SapurV1A.0347s0080.1.p 246 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 291
                             99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.19E-13239295No hitNo description
SuperFamilySSF474596.41E-17239300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16243300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MQPCSREMQG INTLLNPSSQ IPLQDLQNQQ IQNSHFDPNS SSNDDFLEQM LSAIPPSCSW  60
PDLKSPWDLA MPINSNGNGN SAAKPRDLPD ETDNTNVGFH NNFDESVILA SKLRQHQISG  120
GGNGAAAAAA KMMLHPQFLM ASARGGLPQN DVIDGSSFKG GDGSIQELFN GFGAGSMNGT  180
GQALSQSMQH FNHPQGGAMP AQNFGAQVAA TTAVMNQPQP SGSNGGAPAQ PRQRVRARRG  240
QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS  300
RLGGGAAAVA PLVADMSSEA GGDCIQAGAK GGSLARPSNG SQTARTNDSS LTVTEHQVAM  360
LMDEDMGSAM QYLQGKGLCL MPISLATAIS TATCHSRSPA INNNHHPLLQ PIGEGPTSPS  420
MSVLTVQSAT MGNVGGDGGA SKDAASVSKP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0347s0080.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479390.0EF147939.1 Populus trichocarpa clone WS0126_B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325140.20.0transcription factor bHLH66
SwissprotQ9ZUG95e-84BH066_ARATH; Transcription factor bHLH66
TrEMBLB9IMF50.0B9IMF5_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-58LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]