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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0340s0220.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 23110.5 Da PI: 10.098 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.6e-09 | 87 | 133 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++i ++ L++l+P + ++ Ka iL + +++++sL SapurV1A.0340s0220.1.p 87 SHSLAERARREKISAKMRLLQSLVPGC----DGITGKAHILDEIIRHVQSL 133 8*************************9....9*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-14 | 81 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.08E-6 | 81 | 138 | No hit | No description |
PROSITE profile | PS50888 | 14.246 | 83 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-15 | 84 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-6 | 87 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-6 | 89 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MVVGTPDYRE EDQVIQAVTP TMGQMRKQSL PTRKVQRESK REKLPKSSVS RKLERVKPTK 60 RQKTVPPAEL TAGYVHVRAR RGEATDSHSL AERARREKIS AKMRLLQSLV PGCDGITGKA 120 HILDEIIRHV QSLKDRVETL EAELVLVNET AINDFKMNYN MEAQAWHELS PLREISDAPT 180 SLLQPQLTKP ATLEGHERLF SSVD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0340s0220.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452218.1 | 1e-107 | transcription factor bHLH63 isoform X1 | ||||
Swissprot | Q69WS3 | 1e-30 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A3N7EDC3 | 1e-105 | A0A3N7EDC3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s16300.1 | 6e-53 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16101 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 6e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0340s0220.1.p |