PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0327s0070.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 452aa MW: 51450.8 Da PI: 6.7027 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 423.5 | 1.7e-129 | 81 | 450 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 l++lL++cA+a+++++ + ++l+++ + +s +g+p+qRl ay+ e+L ar +s++++y++l+++e + ++ ++++++++e+ SapurV1A.0327s0070.4.p 81 LKQLLIACAKALDENKVNDFDKLIEKARSVVSISGEPIQRLGAYLIEGLVARKESSGTNIYHTLRCKEPE---GKDLMSYMHILYEI 164 689******************************************************************9...99************ PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172 +P+lkf++++aN aI ea ++e+r+HiiDf i qG+QW++LlqaLasRp+g+p++RiTg+++p s+ + + le+++++++ f e++ SapurV1A.0327s0070.4.p 165 CPYLKFGYMAANGAIAEACKNEDRIHIIDFHIAQGTQWMTLLQALASRPSGAPHVRITGIDDPLSKyaRGDGLEAVARQMTAFSEKF 251 **************************************************************9999999****************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 ++p+ef+ v d++ e+++v+pgEalaVn+ l+lh+++desv+++++rd++L+++ksl+Pkvv+++eqe+++n+++Fl+rf+e SapurV1A.0327s0070.4.p 252 KIPIEFHG-VPVFAPDVTKEMFDVRPGEALAVNFPLELHHTPDESVDVNNPRDSLLRMIKSLNPKVVTLMEQESNTNTTPFLTRFVE 337 ********.6888999*********************************************************************** PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 +l+yy a+f+s+++ lpr+++eri+vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF++ pls++ ++ +++llr ++ SapurV1A.0327s0070.4.p 338 TLNYYLAIFESIDVRLPRDQKERISVEQHCLARDIVNVIACEGKEREERHELLRKWKSRFTMAGFRQWPLSSYLNSVIRSLLRCYS- 423 **********************************************************************************9999. PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373 + y++ e +g+++lgWkdr+L+s+SaW SapurV1A.0327s0070.4.p 424 EHYTLVEIDGAMLLGWKDRNLISASAW 450 66************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.677 | 55 | 432 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-127 | 81 | 450 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MGPDEDEEVN RPYISLGKTS RPQTSDQKPR VWSQERQDSH VIQTQTSFVS RQRQFGEGAH 60 VEKRQKEMEE VPLRGIPSGD LKQLLIACAK ALDENKVNDF DKLIEKARSV VSISGEPIQR 120 LGAYLIEGLV ARKESSGTNI YHTLRCKEPE GKDLMSYMHI LYEICPYLKF GYMAANGAIA 180 EACKNEDRIH IIDFHIAQGT QWMTLLQALA SRPSGAPHVR ITGIDDPLSK YARGDGLEAV 240 ARQMTAFSEK FKIPIEFHGV PVFAPDVTKE MFDVRPGEAL AVNFPLELHH TPDESVDVNN 300 PRDSLLRMIK SLNPKVVTLM EQESNTNTTP FLTRFVETLN YYLAIFESID VRLPRDQKER 360 ISVEQHCLAR DIVNVIACEG KEREERHELL RKWKSRFTMA GFRQWPLSSY LNSVIRSLLR 420 CYSEHYTLVE IDGAMLLGWK DRNLISASAW C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-62 | 78 | 450 | 1 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0327s0070.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030903.1 | 0.0 | PREDICTED: scarecrow-like protein 21 isoform X1 | ||||
Refseq | XP_011030905.1 | 0.0 | PREDICTED: scarecrow-like protein 21 isoform X2 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A3N7FV79 | 0.0 | A0A3N7FV79_POPTR; Uncharacterized protein | ||||
TrEMBL | B9I072 | 0.0 | B9I072_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s13460.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 1e-163 | scarecrow-like 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0327s0070.4.p |
Publications ? help Back to Top | |||
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