PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 578aa MW: 64987.5 Da PI: 5.8966

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0327s0070.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	422.4	3.8e-129	207	576	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 l++lL++cA+a+++++ + ++l+++ + +s +g+p+qRl ay+ e+L ar +s++++y++l+++e + ++ ++++++++e+ SapurV1A.0327s0070.2.p 207 LKQLLIACAKALDENKVNDFDKLIEKARSVVSISGEPIQRLGAYLIEGLVARKESSGTNIYHTLRCKEPE---GKDLMSYMHILYEI 290 689****************************************************************9...99******** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172 +P+lkf++++aN aI ea ++e+r+HiiDf i qG+QW++LlqaLasRp+g+p++RiTg+++p s+ + + le+++++++ f e++ SapurV1A.0327s0070.2.p 291 CPYLKFGYMAANGAIAEACKNEDRIHIIDFHIAQGTQWMTLLQALASRPSGAPHVRITGIDDPLSKyaRGDGLEAVARQMTAFSEKF 377 **********************************************************9999999************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 ++p+ef+ v d++ e+++v+pgEalaVn+ l+lh+++desv+++++rd++L+++ksl+Pkvv+++eqe+++n+++Fl+rf+e SapurV1A.0327s0070.2.p 378 KIPIEFHG-VPVFAPDVTKEMFDVRPGEALAVNFPLELHHTPDESVDVNNPRDSLLRMIKSLNPKVVTLMEQESNTNTTPFLTRFVE 463 ****.6888999******************************************************************* PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 +l+yy a+f+s+++ lpr+++eri+vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF++ pls++ ++ +++llr ++ SapurV1A.0327s0070.2.p 464 TLNYYLAIFESIDVRLPRDQKERISVEQHCLARDIVNVIACEGKEREERHELLRKWKSRFTMAGFRQWPLSSYLNSVIRSLLRCYS- 549 ******************************************************************************9999. PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373 + y++ e +g+++lgWkdr+L+s+SaW SapurV1A.0327s0070.2.p 550 EHYTLVEIDGAMLLGWKDRNLISASAW 576 66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.677	181	558	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-126	207	576	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MESHQYFGYG VTGAALSYPS SYPSVPSMPN RLFGSLKLDI GNSTSSPFSS QYDCDTYAAT 60 LSDSQDRHSS TENLSGESSS YFSGLNPSVD CQQESLQIFP GGTSLLQDES SSQNIKLALL 120 KLETTLMGPD EDEEVNRPYI SLGKTSRPQT SDQKPRVWSQ ERQDSHVIQT QTSFVSRQRQ 180 FGEGAHVEKR QKEMEEVPLR GIPSGDLKQL LIACAKALDE NKVNDFDKLI EKARSVVSIS 240 GEPIQRLGAY LIEGLVARKE SSGTNIYHTL RCKEPEGKDL MSYMHILYEI CPYLKFGYMA 300 ANGAIAEACK NEDRIHIIDF HIAQGTQWMT LLQALASRPS GAPHVRITGI DDPLSKYARG 360 DGLEAVARQM TAFSEKFKIP IEFHGVPVFA PDVTKEMFDV RPGEALAVNF PLELHHTPDE 420 SVDVNNPRDS LLRMIKSLNP KVVTLMEQES NTNTTPFLTR FVETLNYYLA IFESIDVRLP 480 RDQKERISVE QHCLARDIVN VIACEGKERE ERHELLRKWK SRFTMAGFRQ WPLSSYLNSV 540 IRSLLRCYSE HYTLVEIDGA MLLGWKDRNL ISASAWC*

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MESHQYFGYG VTGAALSYPS SYPSVPSMPN RLFGSLKLDI GNSTSSPFSS QYDCDTYAAT  60
LSDSQDRHSS TENLSGESSS YFSGLNPSVD CQQESLQIFP GGTSLLQDES SSQNIKLALL  120
KLETTLMGPD EDEEVNRPYI SLGKTSRPQT SDQKPRVWSQ ERQDSHVIQT QTSFVSRQRQ  180
FGEGAHVEKR QKEMEEVPLR GIPSGDLKQL LIACAKALDE NKVNDFDKLI EKARSVVSIS  240
GEPIQRLGAY LIEGLVARKE SSGTNIYHTL RCKEPEGKDL MSYMHILYEI CPYLKFGYMA  300
ANGAIAEACK NEDRIHIIDF HIAQGTQWMT LLQALASRPS GAPHVRITGI DDPLSKYARG  360
DGLEAVARQM TAFSEKFKIP IEFHGVPVFA PDVTKEMFDV RPGEALAVNF PLELHHTPDE  420
SVDVNNPRDS LLRMIKSLNP KVVTLMEQES NTNTTPFLTR FVETLNYYLA IFESIDVRLP  480
RDQKERISVE QHCLARDIVN VIACEGKERE ERHELLRKWK SRFTMAGFRQ WPLSSYLNSV  540
IRSLLRCYSE HYTLVEIDGA MLLGWKDRNL ISASAWC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-61	204	576	1	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0327s0070.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317558.1	0.0	scarecrow-like protein 21 isoform X1
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A1X9QM60	0.0	A0A1X9QM60_9ROSI; Phytochrome A signal transduction 1
STRING	POPTR_0011s13460.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-161	scarecrow-like 5

Link Out ? help Back to Top
Phytozome	SapurV1A.0327s0070.2.p

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]