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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0325s0140.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 758aa MW: 83531 Da PI: 6.8769 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 311.7 | 1.6e-95 | 388 | 756 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 ++L+++Ae+v +g+++ aq +Larl+++ sp+g+p++R+a+yfteAL+ l+ + + ++ a p+++ ++ +++ +++a+ SapurV1A.0325s0140.2.p 388 LDQLYKAAEMVGTGNFSHAQGILARLNQQlspigqqLSPTGKPLNRAAFYFTEALQLLLLMKNNPVA-APPSRSPTPFDVIFKMSAY 473 679************************983333333456666*****************98665555.66777777799******** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168 k++sevsP+++f+++t Nqa+leav +++r+Hi+Dfdi+ G+QW++++q+L R++g+ sl+ T+++sp++++ el+ ++++L++f SapurV1A.0325s0140.2.p 474 KVLSEVSPLIQFGNFTSNQALLEAVGNADRIHIVDFDIGFGAQWASFMQELP-RNRGARSLKTTAFASPSTHHPVELSLMRDNLTQF 559 ***************************************************6.7899****************************** PP GRAS 169 Aeelgvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 A+e+g++fe +v+ ++le + +l +r++++Ea++Vn+ + + ++ +l+s +L+++k+lsPk+vv ++ +d+++ +F SapurV1A.0325s0140.2.p 560 ANEIGLSFELDVINFDSLEqhCYSLPFFRTSEHEAVVVNFPIWCSSN--QPSALPS----LLRFIKQLSPKIVVSLDRGCDRSDLPF 640 ************97776651156778889999*********955544..4555555....*************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +++++al+ y+ l+dsl+a +++++ +k+Er+ll+++i++ v + ++ + ++ +W+ +++aGF+pv++s+++++qa+++ SapurV1A.0325s0140.2.p 641 PQHIVHALKSYTHLLDSLDAV-NATTDDVSKIERFLLQPRIESTVLGRLRA----TDKMPNWKTIFSSAGFSPVTFSNFTETQAECM 722 ******************887.688999******************99988....8999**************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++ + +g++ve++++ lvl W++r+L+s+SaWr SapurV1A.0325s0140.2.p 723 LKRNPARGFHVEKQQALLVLFWQRRELMSASAWR 756 *********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.591 | 361 | 736 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-93 | 388 | 756 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MPFRLQAKGG VDIAGFASIF SLQENWTHRQ RQQLEVDSFP SEEPTSVLHM RKSTSPPTSV 60 STLSSSSNGG AGGNTTDKTT TITGTDKFVN PVNNERNIEW ATELQPIPSG LEFLSTGERC 120 GLGLEDWENM LTEPSQEQSL LRWVAGDVDD TQFGLKQSLQ SGSNQLEFNG NAGGGSGVGG 180 LGIVEQGPGF ESLSGIPGGV SSIGYNSAPF PCPGVPNTGS GLVAPSSSGL VNYKNVGFGS 240 NNNSSLQSQF LSSPTNSVSL PFSLPAGMIY HQNQQQQIAA PEEKPHILNP NLFLQLPFSQ 300 QENRPLHSQL KRHNSGGVDP FSHVSPKTPF SDPGQELLLR KHQQQQLEFP QRVQFLYQQH 360 QQKPLVVKKE DLGTQHHHQQ QQHQHALLDQ LYKAAEMVGT GNFSHAQGIL ARLNQQLSPI 420 GQQLSPTGKP LNRAAFYFTE ALQLLLLMKN NPVAAPPSRS PTPFDVIFKM SAYKVLSEVS 480 PLIQFGNFTS NQALLEAVGN ADRIHIVDFD IGFGAQWASF MQELPRNRGA RSLKTTAFAS 540 PSTHHPVELS LMRDNLTQFA NEIGLSFELD VINFDSLEQH CYSLPFFRTS EHEAVVVNFP 600 IWCSSNQPSA LPSLLRFIKQ LSPKIVVSLD RGCDRSDLPF PQHIVHALKS YTHLLDSLDA 660 VNATTDDVSK IERFLLQPRI ESTVLGRLRA TDKMPNWKTI FSSAGFSPVT FSNFTETQAE 720 CMLKRNPARG FHVEKQQALL VLFWQRRELM SASAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-34 | 416 | 756 | 25 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0325s0140.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454025.1 | 0.0 | LOW QUALITY PROTEIN: scarecrow-like protein 27 | ||||
TrEMBL | A0A2K2B593 | 0.0 | A0A2K2B593_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s11020.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-118 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0325s0140.2.p |