PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0325s0140.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 758aa MW: 83531 Da PI: 6.8769

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0325s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	311.7	1.6e-95	388	756	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 ++L+++Ae+v +g+++ aq +Larl+++ sp+g+p++R+a+yfteAL+ l+ + + ++ a p+++ ++ +++ +++a+ SapurV1A.0325s0140.1.p 388 LDQLYKAAEMVGTGNFSHAQGILARLNQQlspigqqLSPTGKPLNRAAFYFTEALQLLLLMKNNPVA-APPSRSPTPFDVIFKMSAY 473 679**********************983333333456666*************98665555.66777777799**** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168 k++sevsP+++f+++t Nqa+leav +++r+Hi+Dfdi+ G+QW++++q+L R++g+ sl+ T+++sp++++ el+ ++++L++f SapurV1A.0325s0140.1.p 474 KVLSEVSPLIQFGNFTSNQALLEAVGNADRIHIVDFDIGFGAQWASFMQELP-RNRGARSLKTTAFASPSTHHPVELSLMRDNLTQF 559 ***********************************************6.7899************************** PP GRAS 169 Aeelgvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 A+e+g++fe +v+ ++le + +l +r++++Ea++Vn+ + + ++ +l+s +L+++k+lsPk+vv ++ +d+++ +F SapurV1A.0325s0140.1.p 560 ANEIGLSFELDVINFDSLEqhCYSLPFFRTSEHEAVVVNFPIWCSSN--QPSALPS----LLRFIKQLSPKIVVSLDRGCDRSDLPF 640 ********97776651156778889999*****955544..4555555....*********************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +++++al+ y+ l+dsl+a +++++ +k+Er+ll+++i++ v + ++ + ++ +W+ +++aGF+pv++s+++++qa+++ SapurV1A.0325s0140.1.p 641 PQHIVHALKSYTHLLDSLDAV-NATTDDVSKIERFLLQPRIESTVLGRLRA----TDKMPNWKTIFSSAGFSPVTFSNFTETQAECM 722 **************887.688999**************99988....8999************************ PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++ + +g++ve++++ lvl W++r+L+s+SaWr SapurV1A.0325s0140.1.p 723 LKRNPARGFHVEKQQALLVLFWQRRELMSASAWR 756 *******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.591	361	736	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-93	388	756	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MPFRLQAKGG VDIAGFASIF SLQENWTHRQ RQQLEVDSFP SEEPTSVLHM RKSTSPPTSV 60 STLSSSSNGG AGGNTTDKTT TITGTDKFVN PVNNERNIEW ATELQPIPSG LEFLSTGERC 120 GLGLEDWENM LTEPSQEQSL LRWVAGDVDD TQFGLKQSLQ SGSNQLEFNG NAGGGSGVGG 180 LGIVEQGPGF ESLSGIPGGV SSIGYNSAPF PCPGVPNTGS GLVAPSSSGL VNYKNVGFGS 240 NNNSSLQSQF LSSPTNSVSL PFSLPAGMIY HQNQQQQIAA PEEKPHILNP NLFLQLPFSQ 300 QENRPLHSQL KRHNSGGVDP FSHVSPKTPF SDPGQELLLR KHQQQQLEFP QRVQFLYQQH 360 QQKPLVVKKE DLGTQHHHQQ QQHQHALLDQ LYKAAEMVGT GNFSHAQGIL ARLNQQLSPI 420 GQQLSPTGKP LNRAAFYFTE ALQLLLLMKN NPVAAPPSRS PTPFDVIFKM SAYKVLSEVS 480 PLIQFGNFTS NQALLEAVGN ADRIHIVDFD IGFGAQWASF MQELPRNRGA RSLKTTAFAS 540 PSTHHPVELS LMRDNLTQFA NEIGLSFELD VINFDSLEQH CYSLPFFRTS EHEAVVVNFP 600 IWCSSNQPSA LPSLLRFIKQ LSPKIVVSLD RGCDRSDLPF PQHIVHALKS YTHLLDSLDA 660 VNATTDDVSK IERFLLQPRI ESTVLGRLRA TDKMPNWKTI FSSAGFSPVT FSNFTETQAE 720 CMLKRNPARG FHVEKQQALL VLFWQRRELM SASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MPFRLQAKGG VDIAGFASIF SLQENWTHRQ RQQLEVDSFP SEEPTSVLHM RKSTSPPTSV  60
STLSSSSNGG AGGNTTDKTT TITGTDKFVN PVNNERNIEW ATELQPIPSG LEFLSTGERC  120
GLGLEDWENM LTEPSQEQSL LRWVAGDVDD TQFGLKQSLQ SGSNQLEFNG NAGGGSGVGG  180
LGIVEQGPGF ESLSGIPGGV SSIGYNSAPF PCPGVPNTGS GLVAPSSSGL VNYKNVGFGS  240
NNNSSLQSQF LSSPTNSVSL PFSLPAGMIY HQNQQQQIAA PEEKPHILNP NLFLQLPFSQ  300
QENRPLHSQL KRHNSGGVDP FSHVSPKTPF SDPGQELLLR KHQQQQLEFP QRVQFLYQQH  360
QQKPLVVKKE DLGTQHHHQQ QQHQHALLDQ LYKAAEMVGT GNFSHAQGIL ARLNQQLSPI  420
GQQLSPTGKP LNRAAFYFTE ALQLLLLMKN NPVAAPPSRS PTPFDVIFKM SAYKVLSEVS  480
PLIQFGNFTS NQALLEAVGN ADRIHIVDFD IGFGAQWASF MQELPRNRGA RSLKTTAFAS  540
PSTHHPVELS LMRDNLTQFA NEIGLSFELD VINFDSLEQH CYSLPFFRTS EHEAVVVNFP  600
IWCSSNQPSA LPSLLRFIKQ LSPKIVVSLD RGCDRSDLPF PQHIVHALKS YTHLLDSLDA  660
VNATTDDVSK IERFLLQPRI ESTVLGRLRA TDKMPNWKTI FSSAGFSPVT FSNFTETQAE  720
CMLKRNPARG FHVEKQQALL VLFWQRRELM SASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-34	416	756	25	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0325s0140.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024454025.1	0.0	LOW QUALITY PROTEIN: scarecrow-like protein 27
TrEMBL	A0A2K2B593	0.0	A0A2K2B593_POPTR; Uncharacterized protein
STRING	POPTR_0003s11020.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-118	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0325s0140.1.p