PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0324s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 754aa MW: 82903.4 Da PI: 6.6163

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0324s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	297.5	3.4e-91	383	752	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgd........pmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 ++L ++Ae+v sg++ aq +Larl+++ ++++ p++R++ yf+eAL+ l+ ++ + a pp++ ++ +++ +++a SapurV1A.0324s0040.1.p 383 LDQLCKAAEMVGSGNFLHAQGILARLNQQLKQQQQqqqqqqqqPLHRAVYYFKEALQLLLLM-NDNSVTAPPPRSPTPFDVIFKMSA 468 679**********************9843333224566667*************97.56666678888888999*** PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167 +k++se+sP+++f ++t+Nqa+leav+ ++ +Hi+Dfdi+ G+QW++++q+L R++g+ sl+ T+++sp++++ el ++++L++ SapurV1A.0324s0040.1.p 469 YKVLSEISPLIQFVNFTCNQALLEAVDDADSIHIVDFDIGFGAQWASFMQELP-RNRGARSLKTTAFASPSTHHPVELGLMRDNLTQ 554 ************************************************6.7899************************* PP GRAS 168 fAeelgvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 fA+e+g++fe +v+ ++le + +l +r++++Ea++Vn+ + + ++ +l+s +L+++k+lsPk+vv +q +d+++ + SapurV1A.0324s0040.1.p 555 FANEIGLSFELDVINFDSLEqnCYSLPFFRTNENEAVVVNFPIWCSSN--QPSALPS----LLRFIKQLSPKIVVSLDQGCDRSDLP 635 *********97775551155777789999*****955544..4555555....********************** PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 F +++l+a++ ++ l++sl+a +++++ +k+Er+ll+++i++ v + ++ e++ +W+ + ++GF pv++s+++++qa++ SapurV1A.0324s0040.1.p 636 FPQHILHAFQSHVNLLESLDAV-NATTDAVNKIERFLLQPRIESTVLGRLRA----PEKMPNWKTIFASVGFYPVTFSNFTETQAEC 717 ***************887.68999***************99998....9************************** PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++ +g++ve++++ lvl+W++r+L+s+SaWr SapurV1A.0324s0040.1.p 718 VVKRTPARGFHVEKRQALLVLCWQRRELMSASAWR 752 ********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.73	356	732	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-88	383	752	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MELTKRKRGL VDGQGGVDIA GFASIYSQQD TWTHRQQQQQ PLQVNSFASK EPTSALHMRR 60 SQSPPTSVST LSSSSNGGAG GNTTSITATG KAVNPVSNER KDEWATELQP IPSGLEFVSS 120 GERCGLGLED WEDILSEPSQ EQSLLRWIAG DVDDTQYGLK QLLQSGNNQL ELDGNAGAGA 180 GGGGLGIVDQ GHGFESLSGI PGGVSSICSN LAPFPGPGVS NAGSGLVAPG SFSGLVNNRN 240 VGFGNNYNSS VQSPVFSSPS NSVSFPISLP PGMVYHHNQP QHVEASEEKP HILDPHPPPF 300 SQQENRTLHS QLKRHNSGVI DPISHVIPKL PISDPGQEFL LRKQQRQQLG FPQGVQFLHQ 360 QLQQKPLMVK KEDLGVQHQH ALLDQLCKAA EMVGSGNFLH AQGILARLNQ QLKQQQQQQQ 420 QQQQQPLHRA VYYFKEALQL LLLMNDNSVT APPPRSPTPF DVIFKMSAYK VLSEISPLIQ 480 FVNFTCNQAL LEAVDDADSI HIVDFDIGFG AQWASFMQEL PRNRGARSLK TTAFASPSTH 540 HPVELGLMRD NLTQFANEIG LSFELDVINF DSLEQNCYSL PFFRTNENEA VVVNFPIWCS 600 SNQPSALPSL LRFIKQLSPK IVVSLDQGCD RSDLPFPQHI LHAFQSHVNL LESLDAVNAT 660 TDAVNKIERF LLQPRIESTV LGRLRAPEKM PNWKTIFASV GFYPVTFSNF TETQAECVVK 720 RTPARGFHVE KRQALLVLCW QRRELMSASA WRC*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MELTKRKRGL VDGQGGVDIA GFASIYSQQD TWTHRQQQQQ PLQVNSFASK EPTSALHMRR  60
SQSPPTSVST LSSSSNGGAG GNTTSITATG KAVNPVSNER KDEWATELQP IPSGLEFVSS  120
GERCGLGLED WEDILSEPSQ EQSLLRWIAG DVDDTQYGLK QLLQSGNNQL ELDGNAGAGA  180
GGGGLGIVDQ GHGFESLSGI PGGVSSICSN LAPFPGPGVS NAGSGLVAPG SFSGLVNNRN  240
VGFGNNYNSS VQSPVFSSPS NSVSFPISLP PGMVYHHNQP QHVEASEEKP HILDPHPPPF  300
SQQENRTLHS QLKRHNSGVI DPISHVIPKL PISDPGQEFL LRKQQRQQLG FPQGVQFLHQ  360
QLQQKPLMVK KEDLGVQHQH ALLDQLCKAA EMVGSGNFLH AQGILARLNQ QLKQQQQQQQ  420
QQQQQPLHRA VYYFKEALQL LLLMNDNSVT APPPRSPTPF DVIFKMSAYK VLSEISPLIQ  480
FVNFTCNQAL LEAVDDADSI HIVDFDIGFG AQWASFMQEL PRNRGARSLK TTAFASPSTH  540
HPVELGLMRD NLTQFANEIG LSFELDVINF DSLEQNCYSL PFFRTNENEA VVVNFPIWCS  600
SNQPSALPSL LRFIKQLSPK IVVSLDQGCD RSDLPFPQHI LHAFQSHVNL LESLDAVNAT  660
TDAVNKIERF LLQPRIESTV LGRLRAPEKM PNWKTIFASV GFYPVTFSNF TETQAECVVK  720
RTPARGFHVE KRQALLVLCW QRRELMSASA WRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-27	426	752	39	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0324s0040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018300.1	0.0	PREDICTED: scarecrow-like protein 27 isoform X1
TrEMBL	A0A2I4KKE9	0.0	A0A2I4KKE9_POPTR; GRAS family protein
STRING	POPTR_0001s00480.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-113	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0324s0040.1.p