PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0321s0340.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22130.9 Da PI: 7.1588 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.5 | 2.9e-41 | 8 | 136 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkat 86 +G+ FhPtde lv++yL+ k+ g + + ++i+ev+++++ePw+Lp + + ++ ++yfFs+r+ k+++++r nr+t+ g+Wk t SapurV1A.0321s0340.2.p 8 VGYGFHPTDEVLVNHYLRLKMLGGHEQDVSIIEEVNVCDYEPWELPGLLGNqdpKDPKCYFFSPRSYKHENSHRVNRKTEGGFWKLT 94 79******************99999777799***************6333312255699**************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 gkd+ v++k ++e++ kkt+vfy+++ p+g++t+W+mhey+ SapurV1A.0321s0340.2.p 95 GKDRIVKAKaTKEHIANKKTMVFYQKSVPNGVRTNWIMHEYH 136 ******99977888***************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.236 | 6 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.54E-46 | 7 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-22 | 8 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MDFQPSHVGY GFHPTDEVLV NHYLRLKMLG GHEQDVSIIE EVNVCDYEPW ELPGLLGNQD 60 PKDPKCYFFS PRSYKHENSH RVNRKTEGGF WKLTGKDRIV KAKATKEHIA NKKTMVFYQK 120 SVPNGVRTNW IMHEYHPTFS FHNQREFVLC KLKKDPEAIM PAYEEGEASS TVTSHRLENH 180 NSDTATSEII P* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-28 | 9 | 136 | 18 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0321s0340.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440064.1 | 4e-94 | protein NTM1-like 9 isoform X5 | ||||
TrEMBL | A0A3N7G157 | 8e-93 | A0A3N7G157_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10330.1 | 7e-94 | (Populus trichocarpa) | ||||
STRING | POPTR_0014s10350.1 | 2e-94 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 9e-48 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0321s0340.2.p |