PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0321s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 560aa    MW: 61487.2 Da    PI: 6.6311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0321s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14381426555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h   ErrRRd+iN+++  L++l+P++      K++Ka++L +A++Y+ksLq
  SapurV1A.0321s0050.1.p 381 HILSERRRRDKINKKMRALQDLIPNS-----NKVDKASMLDEAIDYLKSLQ 426
                             7789*********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.89E-17372430No hitNo description
SuperFamilySSF474594.58E-19373436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18374436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.434376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-12381426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-16382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDDREHMELL WENGRVLMRG LASSRSCTSY TPLPNKNVNE VKNNSDGYST KRPWLGTGSS  60
IMGDFPLIDD REPRDKYPQD DHHPELLSEL CETSFNMYLE NNENNNFEKN ITDAHVVPEY  120
RNANWRPGNA FEFAAEVPQL STASNGQLYQ SFLEQQKASV PSFHGLPGSK LQQVDSEPDN  180
RPRLQTYPPI LRPAHRKPNQ GSIAARSTSG PGSSRLQQLK SSTDEPPADL VESGQMVPTY  240
ASKVLKYFHE EQNLLASQIV PIGPIARPPE ASPPDEQSEA GLHNYATTSK RCCDLVVGST  300
SGAAEKTIKG KPDRGKSIDQ LAATTSICSR GASNDPTPSL DERQYEDTEG TAYTSDDLEE  360
EEQVPARGSA GSKRKRAAKI HILSERRRRD KINKKMRALQ DLIPNSNKVD KASMLDEAID  420
YLKSLQLQVQ IMSMATRPCM PAMMLPAEMQ HMMLHAPLLA QFSAMGVAMD TRLMQMGAGC  480
SPATFPASAM FGLPAGQMLP MSVSRAPFFP FNIGGHSTHS SAPLPAMSGV ASTPNLEFLR  540
SAVFPSSKDM IYSNTSAHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373388RKRAAKIHILSERRRR
2384389ERRRRD
3385390RRRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0321s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470630.0EF147063.1 Populus trichocarpa clone WS01226_P13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320931.20.0transcription factor PIF3
TrEMBLB9I9990.0B9I999_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-35phytochrome interacting factor 3