PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0320s0130.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 315aa    MW: 33948.4 Da    PI: 8.0007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0320s0130.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07203247144
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                             r++W++ Ed  l+ a +++G g+W+ I +     +Rt+ q+  rw
  SapurV1A.0320s0130.6.p 203 RKPWSEAEDMELISAMQKFGEGNWANIVKGNFkGHRTASQLSQRW 247
                             789***********************9886555699999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.332198255IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-13199251IPR009057Homeodomain-like
SuperFamilySSF466895.53E-12199252IPR009057Homeodomain-like
SMARTSM007177.9E-7202253IPR001005SANT/Myb domain
CDDcd116604.37E-13204252No hitNo description
PfamPF139211.1E-6206251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEKSKRKNKK GVISEEDIST LLQRYTATTI LVLLQEVAQF DGVKIDWNAL AKKTTTGISN  60
AREFQVLWRH LSYRHMLPEK FDDGAHPLDD DSDLDSELEA FPSVTSEASS EAAACVKVLI  120
ASGIPSHPNS AAVEAPLTIN IPNGQSFRAT SENSQPAVMQ GMNITVPVSI QKLSLPAASF  180
GGGADVIDAN GSGSGTFPPR RKRKPWSEAE DMELISAMQK FGEGNWANIV KGNFKGHRTA  240
SQLSQRWAII RKQRGNSNAG TISSGSQLSE AQRAACHAVK MALDSHPAAK SSVAYCSGNF  300
SFLVMFFMDC SVQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204PRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0320s0130.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302346.11e-160mucin-5AC isoform X1
TrEMBLB9GN481e-159B9GN48_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10670.11e-160(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-70MYB_related family protein