PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0320s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GATA | ||||||||
Protein Properties | Length: 291aa MW: 31714.1 Da PI: 5.8133 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.1 | 4.3e-17 | 200 | 236 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp++Rrgp+g+++LCnaCGl+++ +g+ SapurV1A.0320s0100.1.p 200 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 236 *******99************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.883 | 68 | 103 | IPR010399 | Tify domain |
SMART | SM00979 | 4.1E-11 | 68 | 103 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.3E-12 | 72 | 102 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.1E-15 | 132 | 174 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.451 | 132 | 174 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.884 | 194 | 254 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.4E-14 | 194 | 247 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.8E-12 | 196 | 245 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-15 | 199 | 241 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 9.6E-15 | 200 | 236 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.56E-16 | 200 | 243 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 200 | 227 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MYTHSQPMNV HNQIASPGVD DDRAPADSID RHHHIHYEDG TPTVVDDVSP ESVYVTTGVA 60 ASELGIQPSD CSSQLTLTFR GQVYVFDSVT PDKVQAVLLL LGGCELTPGL EITPQNQRGV 120 MDYPSRCTQP QRAASLSRFR QKRKERCFDK KVRYGVRQEV ALRMQRNKGQ FTSAKKSEGG 180 YGWDGGQDSG LDDSQQETLC THCGTNSKST PMMRRGPSGP RSLCNACGLF WANRGTLRDL 240 SKKMDHSVTL IEQGEAEAND SDSGTAIDTD NNLVTYANGG DGDTALITEH * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0320s0100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383573.2 | 0.0 | GATA transcription factor 25 | ||||
Swissprot | Q9LRH6 | 9e-85 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A2K2AH48 | 0.0 | A0A2K2AH48_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s11150.1 | 1e-178 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 2e-80 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0320s0100.1.p |
Publications ? help Back to Top | |||
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