PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0319s0040.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 678aa MW: 73427.8 Da PI: 7.0882 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 376 | 413 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + SapurV1A.0319s0040.4.p 376 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 413 554459******************************88 PP | |||||||
2 | BELL | 126.1 | 1.3e-40 | 240 | 311 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi SapurV1A.0319s0040.4.p 240 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 311 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-63 | 163 | 309 | IPR006563 | POX domain |
Pfam | PF07526 | 2.8E-50 | 169 | 308 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 354 | 417 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.40E-12 | 357 | 418 | No hit | No description |
SMART | SM00389 | 5.3E-9 | 357 | 421 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-17 | 358 | 424 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.6E-29 | 360 | 424 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 374 | 413 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MATYFHGNPE IQAAAASADG LQTLVLMNPT YVQYSDTPPP PPSNNLVFLN AAASAAANSL 60 SPPPHLSGHG PSNTQQFVGI PLDPNSHEAS ALHGLIPRVH YNFYNPIDSS SARETPRAPQ 120 GLSLSLSSQQ QGSFGSQAQA VSGEDIRASG GFVSPGLGVT NGVPGMQGVL LSSKYLKAAE 180 ELLDEVVNVN SNGIKSELSK KSNGISSNNS NRLIGESSAG EGSGEGEASG KRGPELSTAE 240 RQEIQMKKAK LISMLDEVEQ RYRQYHHQMQ IVISSFEQAA GIGSAKTYTA LALKTISKQF 300 RCLKDAITGQ IKAANKSLGE EDCLGGKTEG SRLKFVDHHL RQQRALQQLG MIQHNAWRPQ 360 RGLPERSVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA RVRLWKPMVE 420 EMYMEEIKEQ EQNGSEDKTS KSEHNEDSAS RSVLQEKGSV NGNQSRSFKS LDNSPDAPSA 480 ISIPTASTSP VGGNLRNQSG FSFMGSSELD GIAQGSPKKP RSHDLIHSPT SVPSINMDIK 540 PGEVNNGQVS MKFGDERQSR DGYSFMGGQT NFIGGFGQYP MGDIGRFDGE QFTPRFSGNG 600 VSLTLGLPHC ENLSLSGTHQ TFLPNQNIQL GRRVEMGEPN EYGALNTSTP HSSTAYESMD 660 IQNRKRFITP LLPDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 363 | 420 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 363 | 420 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0319s0040.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT028867 | 0.0 | CT028867.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308323.3 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006381945.2 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006381946.2 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006381947.2 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006381948.2 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2K2A587 | 0.0 | A0A2K2A587_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A385JI42 | 0.0 | A0A385JI42_POPTO; BEL1-like homeodomain 1 | ||||
STRING | POPTR_0006s21950.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-171 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0319s0040.4.p |
Publications ? help Back to Top | |||
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