PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0312s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 323aa    MW: 35065.1 Da    PI: 4.5977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0312s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.7e-062252611555
                             HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             ri ++   Lr+++P+       +K++ a++Le A++YI +Lq
  SapurV1A.0312s0230.1.p 225 RIAERVKCLRKVMPWiT-----TKMDTATVLEDACKYIMNLQ 261
                             67777788*******55.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.807210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0025219266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-9223271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-5224265No hitNo description
Gene3DG3DSA:4.10.280.104.5E-9225270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESEDFDSSF VFNGDPAIQL FPLVSGNDHA DRTTTFNSSV FSDVGAPATA TPMFNSAFSD  60
GGMLGPSLPS YYYCSNNDML ASVPPLPGTT TSYFTNLLNE DGDNYYYYSP PASEQLGYGN  120
PFVAAPQLSP PQESAQPYDF FSPVPLQPLE STQPHDFFSP VPNEAATRPV LNDSQTLESV  180
LGKFNAVTKK PKRSGQMKKP KRSAFDYGIG TGSSSSSASV LTKQRIAERV KCLRKVMPWI  240
TTKMDTATVL EDACKYIMNL QEQVRALEQS RPPATSFDHY NNFVHDAIDV GGGGGGGEGV  300
VSREQIMEMV LKANVDQNFK GF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0312s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444737.10.0uncharacterized protein LOC18107016
TrEMBLA0A2K1X3040.0A0A2K1X304_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2822433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-08bHLH family protein