PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0311s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 313aa    MW: 34734 Da    PI: 7.1099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0311s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12101152155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+++N+ +  +r+++P++   + ++++ a+i   A++++k+L+
  SapurV1A.0311s0110.1.p 101 QRMTHIKVERNRRKQMNDYLTMIRSMMPPS---YVQRPDQASIIGGAINFVKELE 152
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-15100171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.215100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-10100156No hitNo description
PfamPF000104.4E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-12101164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-8106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALETVVFQQ DHLSTFGLGA PWIHGFGLEG EKASYHETTN TTISDIGSDF LPNNNWDTNN  60
SSSQEINRAC KGGFFTGGNA AGRRKRQRRV SIKDEAEVAH QRMTHIKVER NRRKQMNDYL  120
TMIRSMMPPS YVQRPDQASI IGGAINFVKE LEKLIQSLEA HKQINEVQSA TDPNCSSLFS  180
DFFSFSQYSI ASSPNKQSNN SSSSTDSMLA EKRPFANADV EVTMTEKHAN LKILSRRHPK  240
QLSKMVTGLH SLGLYTLHLN VTAVGQMVLY SFSVKVEDEC RLTSVDEIAA AVHEIVGRIQ  300
EDAISNCMPG SE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101112RMTHIKVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0311s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164471e-168AC216447.1 Populus trichocarpa clone ACSB1045-A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031077.10.0PREDICTED: transcription factor bHLH94-like isoform X2
SwissprotQ9C7T41e-59BH096_ARATH; Transcription factor bHLH96
TrEMBLB9H4P90.0B9H4P9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]