PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0310s0130.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 432aa MW: 48006.6 Da PI: 4.5382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0310s0130.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.3e-12	252	303	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ hn+ E+ RR ++N ++ L +llP++ ++skK s i ++ eYI +L SapurV1A.0310s0130.4.p 252 KKQQHNAKEKVRRMNLNASYLALASLLPNS--QRSKKWSAPGIIDEVLEYIPEL 303 6899***********************5..4****************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-13	249	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.06E-10	249	308	No hit	No description
PROSITE profile	PS50888	12.976	251	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-8	252	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-11	252	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-6	257	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MSSSSANREA ASDDQWMYLQ GSGSAVLPFE NHETCSGNSS LGNFNHHVIN SSLTKATIQN 60 IVNYHTDCGS CTIPLEVSDD PCSAIPESST LLQVSDHVFS GELDPRILVE EECFPELAMC 120 RNSTEEFAEL FDKTISELDP VLLLFEQENP GVLSRSEINE DGGFMDGGRN AMINCQKETS 180 LSCPLESSDK LEPIMQDSRK PDTFPEQENQ LSVSSSKSGK RVRKGEMNQY RFNLQMEKME 240 SQPHMEGGST SKKQQHNAKE KVRRMNLNAS YLALASLLPN SQRSKKWSAP GIIDEVLEYI 300 PELESEIEEL TLMKSTELSK IEGRQPHQQD LSAERQAPTI SIHEVGQGEV IVQICSQRRD 360 KEDAALSNLF QNLEEQSISI ASASSINVCE ESTVCHHLHI KMDGNPLGVD YQATLRKKVI 420 CWLNESTPFQ A*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MSSSSANREA ASDDQWMYLQ GSGSAVLPFE NHETCSGNSS LGNFNHHVIN SSLTKATIQN  60
IVNYHTDCGS CTIPLEVSDD PCSAIPESST LLQVSDHVFS GELDPRILVE EECFPELAMC  120
RNSTEEFAEL FDKTISELDP VLLLFEQENP GVLSRSEINE DGGFMDGGRN AMINCQKETS  180
LSCPLESSDK LEPIMQDSRK PDTFPEQENQ LSVSSSKSGK RVRKGEMNQY RFNLQMEKME  240
SQPHMEGGST SKKQQHNAKE KVRRMNLNAS YLALASLLPN SQRSKKWSAP GIIDEVLEYI  300
PELESEIEEL TLMKSTELSK IEGRQPHQQD LSAERQAPTI SIHEVGQGEV IVQICSQRRD  360
KEDAALSNLF QNLEEQSISI ASASSINVCE ESTVCHHLHI KMDGNPLGVD YQATLRKKVI  420
CWLNESTPFQ A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0310s0130.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015581095.1	1e-74	transcription factor bHLH160
TrEMBL	B9SU79	2e-61	B9SU79_RICCO; Uncharacterized protein
STRING	XP_002529548.1	4e-62	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	6e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0310s0130.4.p