PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0302s0230.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 436aa    MW: 48171.9 Da    PI: 4.0208
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0302s0230.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07234282247
                             SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                             ++WT+eE++++ ++v   +       W+  ++t++  Rt k+++++++++
  SapurV1A.0302s0230.4.p 234 NKWTAEEEQIFHEVVLSNPVSsgknFWDNLSATFP-SRTKKELVNYYFNV 282
                             58*************9998778888**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-6230292IPR009057Homeodomain-like
SMARTSM007170.0013232285IPR001005SANT/Myb domain
SuperFamilySSF466895.54E-6232283IPR009057Homeodomain-like
PROSITE profilePS500906.446234283IPR017877Myb-like domain
CDDcd001671.82E-6235283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEHIDQLAPT FSLDNAHQKH LVSGDDSFGE HQDVGRSASD SVTEISNGTS KEFETGDNGC  60
FPQFLWISNG FLEADNLSYF PEYFDHGHQV RALLEPDEAC SSLDYPFRKS VSIGPEHQAN  120
VPEWGSQGSS TSLNQIDESN LQVARAQSSS PGAIIDGCYE ENMRGTCVLP MPEQEASANY  180
CYEATKGDCG CPDSGSIRCI KQHVSEARLK LRENLGEEIF EGLGFCDMGE VVANKWTAEE  240
EQIFHEVVLS NPVSSGKNFW DNLSATFPSR TKKELVNYYF NVFMLRKRAE QNRFDPLNID  300
SDDDEWQRIG GETVGNDEGS AVESLTGQDS SVYCQDDQAE NWNEYVEDED GVVASKDGVD  360
NVALKVATDE EYEGDVDDFS GVQVGIYHGD HAGDLGHKHI SQTSGNYTDD FDVQDDSCTS  420
YDHHQDSIDC CGHLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0302s0230.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455540.10.0uncharacterized protein LOC7461175
RefseqXP_024455541.10.0uncharacterized protein LOC7461175
TrEMBLA0A2K2ATC80.0A0A2K2ATC8_POPTR; Uncharacterized protein
TrEMBLA0A385JHY30.0A0A385JHY3_POPTO; Uncharacterized protein
STRINGPOPTR_0004s11750.10.0(Populus trichocarpa)