PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0302s0230.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 458aa MW: 50787.8 Da PI: 4.1095 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 256 | 304 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++++ ++v + W+ ++t++ Rt k+++++++++ SapurV1A.0302s0230.3.p 256 NKWTAEEEQIFHEVVLSNPVSsgknFWDNLSATFP-SRTKKELVNYYFNV 304 58*************9998778888**********.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-6 | 252 | 314 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.01E-6 | 254 | 305 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0013 | 254 | 307 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.446 | 256 | 305 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.97E-6 | 257 | 305 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MIQKRAFADD NSHEVARKYP RTMEHIDQLA PTFSLDNAHQ KHLVSGDDSF GEHQDVGRSA 60 SDSVTEISNG TSKEFETGDN GCFPQFLWIS NGFLEADNLS YFPEYFDHGH QVRALLEPDE 120 ACSSLDYPFR KSVSIGPEHQ ANVPEWGSQG SSTSLNQIDE SNLQVARAQS SSPGAIIDGC 180 YEENMRGTCV LPMPEQEASA NYCYEATKGD CGCPDSGSIR CIKQHVSEAR LKLRENLGEE 240 IFEGLGFCDM GEVVANKWTA EEEQIFHEVV LSNPVSSGKN FWDNLSATFP SRTKKELVNY 300 YFNVFMLRKR AEQNRFDPLN IDSDDDEWQR IGGETVGNDE GSAVESLTGQ DSSVYCQDDQ 360 AENWNEYVED EDGVVASKDG VDNVALKVAT DEEYEGDVDD FSGVQVGIYH GDHAGDLGHK 420 HISQTSGNYT DDFDVQDDSC TSYDHHQDSI DCCGHLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0302s0230.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455540.1 | 0.0 | uncharacterized protein LOC7461175 | ||||
Refseq | XP_024455541.1 | 0.0 | uncharacterized protein LOC7461175 | ||||
TrEMBL | A0A2K2ATC8 | 0.0 | A0A2K2ATC8_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A385JHY3 | 0.0 | A0A385JHY3_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0004s11750.1 | 0.0 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0302s0230.3.p |