PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0299s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 523aa    MW: 57758 Da    PI: 10.641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0299s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07943338
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                            +W t+E++ll  av ++G+++W+++a+++   Rt +
  SapurV1A.0299s0230.1.p  9 KWGTWEELLLGGAVIRHGTRDWNLVASELR-ARTVN 43
                            8****************************9.99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.6E-6943IPR001005SANT/Myb domain
CDDcd001670.00298943No hitNo description
SMARTSM002975.1E-13268372IPR001487Bromodomain
SuperFamilySSF473703.79E-16275371IPR001487Bromodomain
CDDcd043697.67E-6275334No hitNo description
Gene3DG3DSA:1.20.920.104.4E-13275369IPR001487Bromodomain
PfamPF004391.5E-10278356IPR001487Bromodomain
PROSITE profilePS500149.904283353IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MGTEILIKKW GTWEELLLGG AVIRHGTRDW NLVASELRAR TVNCPYTFTP EICKAKYEDL  60
QQRYSGCKAW FEELRKKRMA ELRRALEQSE GSIGSLESKL EILKTGRRED CHVSYDSSQT  120
ESPVLFLKCG GIESSSKETS KDGLSAGSFT QDTKTNWTPE CRVPTAVPAA EIEIKPEVSV  180
SPEENKVPSI WKLSESIFAG QVSSLKGRRG KRKRKDCTKD VKEGSVGESE FLESADALFA  240
TRCKDNSAST SGQIARCSTI DYQSRGSSKD GVVDIRVIFD SIAENKCASV FHRRLDSQKR  300
GRYKKMIWQH MDIDTIRSRI GSGSITTAKE LFRDLLLLAN NALVFYSKTT RENKSALLLR  360
NIVTKSLRQN LRNYITKTTI ALLSTTSLIL RAPVKPQSAR PGNGKLPGKV TKAGKLVAKT  420
PNTGNRPNNV HSPPSAESLA FKKKGASHSP PLAESLAMRK KSSHPFPLAE SLATRKKSSH  480
SLPSAESLAT RKKGSGRPRK TGQESSQRLE SVPKGRKTSR VK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207215RRGKRKRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0299s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455997.10.0uncharacterized protein LOC7490802 isoform X1
TrEMBLA0A2K2APF90.0A0A2K2APF9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.13e-32DNA-binding bromodomain-containing protein