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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0299s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Dof | ||||||||
Protein Properties | Length: 304aa MW: 33836.5 Da PI: 8.5494 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.8 | 3.8e-36 | 43 | 100 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++lkcprC+stntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ SapurV1A.0299s0040.1.p 43 SESLKCPRCESTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGSLRNVPVGGGRKNKRP 100 5789***********************************************9877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-23 | 35 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-31 | 45 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.503 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGLSSKQVTS NGLDWSQTLL QERTLELPKP AGIRRQQQQN LQSESLKCPR CESTNTKFCY 60 YNNYNKSQPR HFCKTCKRHW TKGGSLRNVP VGGGRKNKRP KTSKSSASNT TSTNTASTAV 120 PRSNDRNNMI NRVNPQLPIQ SQQQKQNLPD LVLGDQKNLS EILDQAITNP PSSVLQQNSI 180 SCSNLDTKSF STNNNGVLLC SSLSLPQNQG LLFPYSSSFD THPSSICTSS FQPSNVYNYA 240 GEYMEDSTIT TIMPSTSSTI THPWQVPNTS SGMDMANYWN WDDIENYVST DLNVTWDDSE 300 IKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0299s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027896.1 | 1e-177 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Refseq | XP_011027898.1 | 1e-177 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
TrEMBL | B9H263 | 1e-171 | B9H263_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s03900.1 | 1e-172 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 2e-29 | DNA binding with one finger 2.4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0299s0040.1.p |