PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0291s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 383aa    MW: 42071.1 Da    PI: 6.4618
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0291s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17269303135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  SapurV1A.0291s0020.1.p 269 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 303
                             99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.3E-7621359IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-16263313IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.097263299IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-14266301IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.28E-15266327No hitNo description
CDDcd002024.46E-14268315No hitNo description
PfamPF003201.4E-15269303IPR000679Zinc finger, GATA-type
PROSITE patternPS003440269294IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEAPEFYGAT GFCSAQFTSN EKHHSLDSNN KSIGVGDHFI VEDLLDFSNE DDDAMVADPN  60
NNNTIVAAAA NSTDSSTVTV VDSCNSSSFS GREPSSFNGD NGSHYTNNFS HHDVHFGSEL  120
CVPYDDLAEL EWLSNFVEES FSSEDLQRLQ LISGMKARPE ESSKSRHFQT HGNTDDNNNG  180
DVSNISNING TMFNPETAVP AKARSKRSRA APGNWASRLL VLSPSTSSSE TEIIAGPTPY  240
PSSGKKTIKG EAGPKKRDGG AEGCDGRRCL HCATDKTPQW RTGPMGPKTL CNACGVRYKS  300
GRLVPEYRPA ASPTFVLTKH SNSHRKVLEL RRQKEMTRAQ QQHQHQQFLH HHQNMVFDVS  360
NGGDDYLIHQ HVGPDFRQMI QQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0291s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445864.10.0GATA transcription factor 12-like
SwissprotP697818e-94GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2K1WVS50.0A0A2K1WVS5_POPTR; GATA transcription factor
STRINGPOPTR_0018s08090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-79GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]