PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0289s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 698aa    MW: 77877.1 Da    PI: 4.6863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0289s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27e-14478523454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L
  SapurV1A.0289s0260.1.p 478 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 523
                             7999**********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-559191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-19476540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11478523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18478541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.93E-15478528No hitNo description
SMARTSM003534.2E-17480529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MAAQLSSRLQ TILQAAVQSV EWTYSLFWQM CPQQGILVWG DGYYNGPIKT RKTVQPMEVS  60
TEEASLQRSQ QLRDLYDSLS IGENNQPERR PCAALSPEDL TETEWFYLMC VSFSFSTGAG  120
LAGKAYDRKK HVWLTGANDI DSKTFSRAIL AKSAGIQTVV CIPLLGGVVE FGTTDKIKED  180
LGFIQHVKAF FSDHHHHLPP PKPALSGHST SNPATSSDHA LILSSPIPPF YVAADPPANA  240
DRMDEDEEEE EEDEDDDEEE QEQESDSEAE TSRDALLGPC QAQIPLQMAV AEPSELMQLE  300
MSEGIRLGSP DDGSNNLGLD FPLICQDSLM DHHSRADSFR AESARRWTML QENPFSSSLQ  360
PSASGPPPLD ESAQEDTRYS QTVSTILQNQ TTQLAAEPSL NEYEACSDLS AFAKWMNRSD  420
HYLNVPVETT SQWLLKYILF TVPHLHNNYR QENSPKSRDG DATNKFRKGT PQDELSANHV  480
LAERRRREKL NERFIILRSL VPFVTKMDKA SILGDTIEYV KQLLKKIQDL EAFNKQMESE  540
RRSRSADPPQ RTTTSSSLKE QNNGVTVVER ARTDGPGPDK KKMRIVEDYT SGRAQPKSAE  600
AVPPPEPMVD GEPEISVEVS IIESDALLEL QCGYREGLLL DIMQTLRELR IETIAVQSSS  660
NNGIFVGELR AKVKENVGGK KLSIVEVKRA IRQIIPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-2151929193Transcription factor MYC3
4rqw_B4e-2151929193Transcription factor MYC3
4rs9_A4e-2151929193Transcription factor MYC3
4yz6_A4e-2151929193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482487ERRRRE
2483488RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0289s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451876.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2K2BDU70.0A0A2K2BDU7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-91bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]