PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0289s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 518aa    MW: 56967.5 Da    PI: 6.7951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0289s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16322368455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  SapurV1A.0289s0130.1.p 322 VHNLSERRRRDRINEKMRALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 368
                             6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-20316380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-17321372No hitNo description
PfamPF000109.2E-14322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-20322376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNHCIPDWNF EGDLPVSNQK NPIEPDNELV ELLWRNGQVV LHSQTQRKPS PHVQKHDSPT  60
VTGYGSTLNS SHLIQDDETV SWIHDPLEDS FEKEFCSNFF SELPPPLSDQ ISSEEKSAKF  120
DASKTSHQQQ QQLNNNKHPV VLEFSGNPMP PPRIQVQEQN HTSVGGFGKA VNVNLSQFSA  180
PLKVGDFRSS SPQFGGQWSG DFSQGEAREC SVVTVGSSNQ ISRDSFLSRA SGDATGTSTG  240
LSAGPSIDDP RKVISQSERG KADRTLDPTV TSSSVPGRSL KRKTMHAEES ECLSEDAELD  300
SAMENKPTKR SGSTRRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCNK SDKASMLDEA  360
IEYLKSLQLQ LQVMWMGSGV VPMVFPGVQH FMSRMGMGPP PLPSIQNPMH LPRVPLVDQS  420
ISMAPTQNQA VICQTPVLNS VNYQKQMQNP TFSDQYARFV GYQMQAASQP MNMFRHSSQT  480
AQQNQVMAPP SSGGGPLSAG TAARDAPPSD PRRQGLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0289s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026200.10.0PREDICTED: transcription factor PIF4
RefseqXP_011026201.10.0PREDICTED: transcription factor PIF4
RefseqXP_011026202.10.0PREDICTED: transcription factor PIF4
RefseqXP_011026203.10.0PREDICTED: transcription factor PIF4
TrEMBLB9GSQ90.0B9GSQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05630.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.48e-48phytochrome interacting factor 3-like 6