PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0285s0090.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 579aa    MW: 64156.3 Da    PI: 4.5444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0285s0090.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.49.7e-52101411127
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+di+k++PwdLp  + +k+++ ew+fF++ d+ky++g+r+nrat++gyWka
  SapurV1A.0285s0090.2.p  10 LPLGFRFRPTDEELISHYLRLKINGRDSEV-EVIPEIDICKWDPWDLPglSVIKTDDPEWFFFCPLDRKYPNGHRSNRATDAGYWKA 95 
                             699************************999.99***************6447888899***************************** PP

                     NAM  86 tgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                             tg+d++++s+    +++l+g+kktLvf++grapkge+t+W+mheyr
  SapurV1A.0285s0090.2.p  96 TGRDRTIKSRksagNTTLIGMKKTLVFHRGRAPKGERTNWIMHEYR 141
                             *********977766677***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-604165IPR003441NAC domain
PROSITE profilePS5100555.80410165IPR003441NAC domain
PfamPF023651.9E-2611141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MVAMVPVDSL PLGFRFRPTD EELISHYLRL KINGRDSEVE VIPEIDICKW DPWDLPGLSV  60
IKTDDPEWFF FCPLDRKYPN GHRSNRATDA GYWKATGRDR TIKSRKSAGN TTLIGMKKTL  120
VFHRGRAPKG ERTNWIMHEY RPTEKDLDGT GPGQGAFVLF RLFRKPEERT DVVKYEEIEQ  180
IGYSPTAAKS SPDNASPDLI QETATSDLHS GKQPGDIKMW FTESDNLTTN SVIHVDSCSN  240
SHATSDIEDQ VPEATAVEAS PLLDESSLLR EPVSFELDCE VFSPVQSRIP ADLGCYMDSP  300
YASDFGNDQN GFPFQDFSGE QDVSITELLD DFFNNHDECS GEETSQNNFG VGRETQLSGQ  360
IPPANSYVPD NGIYSFMNNV QHVSLMRVPV WPCDQFCSNE LLQMQHALGT LRGPTPVFDG  420
ELGRGNIGYF SNDFAGQDAP SAKSAISSFG AHNSIKEATS QMTFVENGSG VSGTGIEIRA  480
RQPQVQPRSD TFIAQGSAPR RIHLQLETKL FSESVGECKV KDAGYIEDED EVQSAVTEVS  540
AITPRQCGVS IEMHPVTIDF IQLVFAGHWK YCKANPCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-42916516165NO APICAL MERISTEM PROTEIN
1ut4_B2e-42916516165NO APICAL MERISTEM PROTEIN
1ut7_A2e-42916516165NO APICAL MERISTEM PROTEIN
1ut7_B2e-42916516165NO APICAL MERISTEM PROTEIN
4dul_A2e-42916516165NAC domain-containing protein 19
4dul_B2e-42916516165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0285s0090.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492980.0AC149298.1 Populus trichocarpa clone Pop1-021H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038026.10.0PREDICTED: uncharacterized protein LOC105135051
TrEMBLA0A2K2CDK40.0A0A2K2CDK4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45700.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-143NAC 014