PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0284s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 362aa    MW: 40413.5 Da    PI: 6.4332
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0284s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141764148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W + Ed++l   ++++G ++W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0284s0110.1.p 17 RGPWNPAEDLRLTTFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 64
                            89******************************99************97 PP
2Myb_DNA-binding53.26.7e-1770115148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  SapurV1A.0284s0110.1.p  70 RGSFSEEEEDTIINLHQTLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 115
                             899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-22867IPR009057Homeodomain-like
PROSITE profilePS5129412.4651264IPR017930Myb domain
SuperFamilySSF466891.46E-2815111IPR009057Homeodomain-like
SMARTSM007172.2E-111666IPR001005SANT/Myb domain
PfamPF002495.2E-131764IPR001005SANT/Myb domain
CDDcd001671.15E-71964No hitNo description
PROSITE profilePS5129425.48165119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2768119IPR009057Homeodomain-like
SMARTSM007172.5E-1569117IPR001005SANT/Myb domain
PfamPF002495.0E-1670115IPR001005SANT/Myb domain
CDDcd001674.91E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGGRGRAPCC DKSQVKRGPW NPAEDLRLTT FIQKHGHENW RALPKQAGLL RCGKSCRLRW  60
INYLRPDVKR GSFSEEEEDT IINLHQTLGN KWSKIASHLP GRTDNEIKNV WNTHLKKKLA  120
CKDDGEHSDQ SKESSSTSSS SSSTSSTVMS SGKRSLEMEL GEQNNQGFST KKPRILENEE  180
EDTSPREQSN NQLEPAKKPN KLSSSSFSSN NSNITNSSQV DVSEPDGEKM GSLSNRRGRC  240
NAHKSLEEVN KPEEVVAEIP FESDYDFWNM LDSLSSFQSG GIQLQNAEAG RSSKSGNAWN  300
AGEVENNKWL RYLESELGLD EKQRNAAETT VPENFEYDMP LKPAELVHPG TSGNFHLWPS  360
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-26171194105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-26171194105C-Myb DNA-Binding Domain
1msf_C6e-26171194105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0284s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310679.10.0transcription factor MYB58
TrEMBLB9HGV50.0B9HGV5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s08190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.11e-71myb domain protein 72