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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0283s0180.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 1029aa MW: 112953 Da PI: 5.0861 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5e-17 | 40 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l SapurV1A.0283s0180.2.p 40 KGQWKAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 86 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 66.4 | 5e-21 | 92 | 138 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l SapurV1A.0283s0180.2.p 92 KGPWSKEEDEIIVELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 138 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.5 | 8.7e-15 | 144 | 186 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ SapurV1A.0283s0180.2.p 144 KEAWTQQEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 186 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.75 | 35 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-15 | 37 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-14 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 40 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.31E-13 | 43 | 86 | No hit | No description |
PROSITE profile | PS51294 | 33.357 | 87 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-31 | 89 | 185 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-19 | 91 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-19 | 92 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.19E-17 | 94 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 95 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.727 | 143 | 193 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 143 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-15 | 143 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-13 | 144 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.54E-11 | 146 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1029 aa Download sequence Send to blast |
MESSDKLISA PLDGLVSDRI PRPPKLLHGR TSGPARRSTK GQWKAEEDEI LRKAVQRFKG 60 KNWKKIAECF KDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVELVNKY GPKKWSTIAQ 120 HLPGRIGKQC RERWHNHLNP AINKEAWTQQ EELALIRAHQ IYGNRWAELT KFLPGRTDNA 180 IKNHWNSSVK KKLDSYVASG LLEQFQSSPL VGHQTLSMPS SSSRLHSSGD DNAQRGGSEA 240 EDISECSQGS TMVGCSQSAG DLGIAVFHTR EELQYAEESG LRKEQSSSPA SCSEQYYIPE 300 MPCELGGSSN FLQQSFSHNT LPSTSNDYQF DLPELPNLSA LELRQESSAL PTHCINANKS 360 HELVNAPFQT SNGQLDAPTS MGNIAASSEQ SGQIFISDDE CCRILFSEAA KCEIFSSENI 420 TKDSNVADLG GEMDSSLPQS PNIQISETER STSQSSCPPR SSILGTSCCQ YFLPGPSLHS 480 ADDNKLVHGR EPNQLTVQSF GTLEQQFITS MHDSFIYTND AINPSCDNGT GNTVLQEQPF 540 LKEPPKLVPV NTFSSDSVTI SSCAANEKPN EHAEQQEAGG LCYEPPRFPS LDMPFLSCDL 600 VQSGSDMQQE YSPLGIRQLM MSSMNCITPF RLWDSPSRDG SPDAVLKSAA KTFTGTPSIL 660 KKRNRDLLSP LSDRRGDKKL EIDMASNLSK EFSCLDVMFD GSEIHNRSTS LLPSSSKQEK 720 NHESSGEDKE NLDPALEGAE EFCNNTKDNV KQGTGDCDAR SKVHSDASSS GALCEENTND 780 LLFSPDQLGF KTDRAFAPSA RTPRNLYRKI LGTLSELASG SESQFGNPCM IFSPTICKKN 840 HENHIIESTS AQSIPSPAPS ENMPDNSGNN GGNGNFGIFG DTPFKRSIES PSAWKSPWFI 900 NSFVPGPRID TEISIEDIGY FMSPGDRSYD AIALMKELSE HTASAYADAL EVLGKDTPES 960 ILKEKRHSND QNGDQENRSS HLASNVSTEC RTLDFSECGT PGKITENGKS SSAISFSSPS 1020 AYLLKGCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-69 | 40 | 193 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-69 | 40 | 193 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0283s0180.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026592.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like isoform X2 | ||||
TrEMBL | A0A3N7G9D4 | 0.0 | A0A3N7G9D4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s00710.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0283s0180.2.p |