PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SapurV1A.0280s0150.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 288aa MW: 31668.9 Da PI: 6.6029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0280s0150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H SapurV1A.0280s0150.1.p 112 FSCNYCQRKFYSSQALGGHQNAH 134 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.45E-6	108	139	No hit	No description
PROSITE profile	PS50157	11.427	112	139	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEPPARSEAC LSETSSMISV SNAPLCLNPP VIMESQKEGR QLEEDQEEEE EEEHHDGGDT 60 SYDLVLDLSL SSKDSNQDSS KRRASLVDSF DTDPTSKSMD TPQGNETEPR VFSCNYCQRK 120 FYSSQALGGH QNAHKRERTL SKRGQRISAA SFALLQPNYS QQNRYTSMAS LPLHGSFNRS 180 LGIQVHSMIH KPFSTSSSSS IYGKNGGSRK PIDQQPAIGR LASDKFQMAT NINGSSSSNG 240 VARFEITRKF SPASTEGIGG FWWDGSGVNH LKTKHDDLQK LDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0280s0150.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002297800.2	1e-164	zinc finger protein 1
TrEMBL	B9GMC4	1e-163	B9GMC4_POPTR; Uncharacterized protein
STRING	POPTR_0001s14780.1	1e-163	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-39	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	SapurV1A.0280s0150.1.p