PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0278s0250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 371aa MW: 42448.3 Da PI: 9.2519 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.4 | 2.1e-14 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++ +lKK + S+LC+++++viif++++ SapurV1A.0278s0250.1.p 11 IRNEKSRTHTFRKRKTNLLKKVSDFSILCGVDACVIIFGPNQ 52 899************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.404 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.15E-17 | 4 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.75E-18 | 4 | 51 | No hit | No description |
Pfam | PF00319 | 2.1E-16 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MVNKRIEMEL IRNEKSRTHT FRKRKTNLLK KVSDFSILCG VDACVIIFGP NQNDQPAATA 60 ETWPSNPDEV RCIINRYKAS DQPRKCYQGS DYFAAKKKKI DAEFAKLHRQ VLKSKYPIWD 120 DRLNSLSIDQ LGVILAQMDT KIESTDKTLS FFKEYSSQRC QNISHGIQKR RKRNENSNEN 180 MDSTDFLQLV SNRKSFEAQL PIPFQPEMSS HMATPDENSL NERIYNNGYS TLYSEPKPLS 240 VFPPAHYESK QSVYRTPSQT NITEDAMMKM MMSYQSHNNS FGCQASSRNN QCLSCNGPFY 300 VNPASWTLDN VWFDNDDSTV SSVAPTMQPM QPYKQFPMTS FPMTSFLNSM VMLSLIVGIK 360 VKTRSGIVKI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0278s0250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300109.1 | 0.0 | agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A2K2C7C9 | 0.0 | A0A2K2C7C9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s33740.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 3e-25 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0278s0250.1.p |