PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0277s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 369aa    MW: 43160.8 Da    PI: 8.3497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0277s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81.1e-066687223
                            EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                            +C++Cg sF+ + +L +H+++H
  SapurV1A.0277s0070.1.p 66 TCEKCGASFKKPAYLIQHMQSH 87
                            6*******************99 PP
2zf-C2H215.45.1e-0593117123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             +kC+  dC+ s++rk++L+rH+  H
  SapurV1A.0277s0070.1.p  93 FKCSydDCHASYRRKDHLTRHLLQH 117
                             89*******************9887 PP
3zf-C2H218.65.1e-06122147123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                             + C+  +C++ F  +snLkrH r  H
  SapurV1A.0277s0070.1.p 122 FNCQneNCNREFVYPSNLKRHVRElH 147
                             679999*****************988 PP
4zf-C2H217.41.2e-05162186123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             y+C+   Cgk F  +s L++H  +H
  SapurV1A.0277s0070.1.p 162 YVCQepGCGKAFGYPSKLRKHEDSH 186
                             99*******************9888 PP
5zf-C2H216.13.1e-05254278223
                             EET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                             kC+  dC  +Fs+k nL++H +  H
  SapurV1A.0277s0070.1.p 254 KCHfkDCQHTFSTKTNLNQHVKAvH 278
                             7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8712148IPR007087Zinc finger, C2H2
SMARTSM00355242143IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.51E-1064117No hitNo description
PROSITE profilePS5015713.0486592IPR007087Zinc finger, C2H2
SMARTSM003550.00736587IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-96691IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-992119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.9393122IPR007087Zinc finger, C2H2
SMARTSM003550.00893117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-6120144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.84E-7122186No hitNo description
PROSITE profilePS5015712.57122152IPR007087Zinc finger, C2H2
SMARTSM003550.029122147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-9157186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.198162191IPR007087Zinc finger, C2H2
SMARTSM003550.005162186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164186IPR007087Zinc finger, C2H2
SMARTSM003554.8194219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196219IPR007087Zinc finger, C2H2
SMARTSM0035517222243IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.5E-6235290No hitNo description
PROSITE profilePS5015711.946253283IPR007087Zinc finger, C2H2
SMARTSM003550.0033253278IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4254281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280255278IPR007087Zinc finger, C2H2
SMARTSM0035511284310IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280286310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MMEEGQAEKE RPVIFRDIRR YYCDYCGICR SKKSLITSHV LTHHKEEMDE ERVDGDEGKE  60
GLKSNTCEKC GASFKKPAYL IQHMQSHSLE RPFKCSYDDC HASYRRKDHL TRHLLQHEGK  120
LFNCQNENCN REFVYPSNLK RHVRELHDER SPSNSFGGEK QYVCQEPGCG KAFGYPSKLR  180
KHEDSHVSLD HVEAMCLEPG CMKHFSNKEC LKAHIQSCHQ YINCDICGTR QLKKNIKRHL  240
RTHEPASDST ERIKCHFKDC QHTFSTKTNL NQHVKAVHLE HRPFLCGFPG CDMRFSYKHV  300
RDNHEKSGLH VYTPGDFVES DQQFRSKPRG GRKRNIPTVE MLIRKRVTPP AKSDEYHSWL  360
HEMETENQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A4e-164118219149PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0277s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376244.10.0transcription factor IIIA
SwissprotQ84MZ41e-141TF3A_ARATH; Transcription factor IIIA
TrEMBLU5FVV90.0U5FVV9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-144transcription factor IIIA