PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0274s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 331aa    MW: 36297.9 Da    PI: 5.123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0274s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH573.4e-184392255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  SapurV1A.0274s0040.1.p 43 RSKHSETEQRRRSKINERFQALRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 92
                            899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-2438112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-2040112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.724191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-174396No hitNo description
PfamPF000101.0E-154392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-144797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVKSAKSQLD EEDEPEDYDS SSYKGEVVKA ESKSSEPKAN ANRSKHSETE QRRRSKINER  60
FQALRDLIPQ NDQKRDKASF LLEVIEYIQF LQDKLQMYEG SYEGWSQEPA KLLPWKIDRA  120
SAESLLDHNT QVMKNGSAHE NSVSLANVHN SIESDMGAAA MYKTLDHPPG PTSQAIPFDA  180
QTPSNVFAAV GRGGLQESVS DAENMAYQLQ SQLLHGRPCA TECSTPNNTL NGQQDLASDS  240
LSVNISNAYS QRILNTLTQA LHSSGVDLAQ TSIGVQIDVG KRENSTTAVA PSSKDQVNQY  300
LSNQVIVQDG VGSGAENSEQ AHKRPRREKC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0274s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999419.10.0PREDICTED: transcription factor BIM2-like isoform X1
TrEMBLU5GF360.0U5GF36_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-55BES1-interacting Myc-like protein 2