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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.0272s0170.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
GATA |
| Protein Properties |
Length: 382aa MW: 42225.5 Da PI: 6.5037 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0272s0170.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 55 | 1.1e-17 | 267 | 301 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C t kTp+WR gp g+ktLCnaCG++y++ +l
SapurV1A.0272s0170.1.p 267 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 301
99*****************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MEAPELYGTT GFCSSQFTSN EKHHSFDSNK SIGGGVAGGD HFIVEDLLDF SNEDEDAMMT 60
DPNYNNNIVT PTTNSTDSST ATFVDSCNSS SFSGCEPSGF NGDIGSHYTN NFSHHDVHFG 120
SELCVPYDDL AELEWVSNFV EESFSSEDLQ RLQLITGMKA RPDESSETRH FQTDDNNNGY 180
VSNICSNNTM FNPEMAVPAK ARSKRSRAAP GNWASRLLVL SPATSSSEPE IIPGSTQHPN 240
SGKKTIKGAA GLKKRDGGVE GGEGRKCLHC ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR 300
LVPEYRPAAS PTFMLTKHSN SHRKVLELRR QKEMVRTHQH QHQHQHQQFL HHHQNMMFDL 360
SNGGDDYLIH QHAGPDFRQM I*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
