PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0268s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 348aa    MW: 38389.1 Da    PI: 8.207
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0268s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.82.8e-131995274
                trihelix  2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74
                            Wt +e+++Liea+r ++er          rgk  + +W++v ++++      s++qC++kw+nl ++ykk++++e+k +++
  SapurV1A.0268s0160.1.p 19 WTVSETMVLIEAKRMDDERRMkrsdgaegRGKPTELRWKWVEDYCWN----QSQNQCNDKWDNLMRDYKKVRDHERKIAER 95
                            *************9666666522222222346999**********85....69***********************98544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.051179IPR017877Myb-like domain
PfamPF138372.0E-81891No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMADQGGTVL IREYRKGNWT VSETMVLIEA KRMDDERRMK RSDGAEGRGK PTELRWKWVE  60
DYCWNQSQNQ CNDKWDNLMR DYKKVRDHER KIAERSGEGN EGSYWKLEKN ERKDKNLPSN  120
MLPQIYEALV EVVEKRGGGQ QRMLTAAGGS CSNPNTSFAV ERPITAVQPS VLPPLLQHQI  180
PAAPIPALPL PPPPPPPPPP PPPPPSQQPQ AQPPPPTQYP EPFPTMCDSS DSDTSEYSDS  240
PAKRRRRSGG GGEGTSGGIA SASTSNEVGN AISKSASIIA QAIQACDERE ESRHRDLLSL  300
HERRLKIEES KTEINRQGIH GLVDAINKLA NSILALASHK NQSSGPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0268s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084851e-167AC208485.1 Populus trichocarpa clone JGIACSB253-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001294.11e-178PREDICTED: protein enabled homolog isoform X1
TrEMBLA0A2K1YCD01e-176A0A2K1YCD0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s11820.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-55Trihelix family protein