PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0267s0240.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 585aa    MW: 65220.6 Da    PI: 4.8366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0267s0240.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.22.9e-1342155842374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++lL+e A+a+s+g+ e+a++l+++l++l+s +gdp qR+aay++e+Laar+a+s++ lykal+++e +   ss++laa+++++e++
  SapurV1A.0267s0240.3.p 215 RQLLFESANAISEGNIEKASTLINELRQLVSIQGDPSQRIAAYMVEGLAARMAGSGKYLYKALKCKEPP---SSDRLAAMQILFEIC 298
                             689*****************************************************************9...9************** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P++kf++++aN a+ ea++ge+rvHiiDfdi+qG Q+++L+q+La+ +++ p+lR+Tgv++p+s+  +   l+ +g+rL+k+Ae+l+
  SapurV1A.0267s0240.3.p 299 PCFKFGFMAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANVQGKLPHLRLTGVDDPDSVqrHVGGLRIIGQRLEKLAEALK 385
                             ***************************************************************99888999**************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             v+fef++ va++++ +++++L+ kpgEal+Vn+++qlh+++desvs+ +erd++L++ ksl+Pk+v+vveq++++n+++F+ rf+ea
  SapurV1A.0267s0240.3.p 386 VSFEFHA-VASKTSLVNPSMLNRKPGEALIVNFAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEA 471
                             *******.7****************************************************************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                              +yysa+fdsl+++lpres++r +vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF + +++ ++++ ++ l++++ ++
  SapurV1A.0267s0240.3.p 472 YNYYSAVFDSLDVTLPRESQDRLNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFISCSITPNVVDMIRILIKEYCDR 558
                             *************************************************************************************66 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              y++++e g+l +gW+d++L+++SaW+
  SapurV1A.0267s0240.3.p 559 -YMLKQEAGALHFGWEDKSLIVASAWK 584
                             .*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.167188565IPR005202Transcription factor GRAS
PfamPF035149.9E-132215584IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSLVGPAELS ATPYGNHKLY SLKGSKDNSG LSAQIFSPDK RQNMYMTDSY SSESYEKYFL  60
DSPTEELIQP SSSGISGNSA PPQGTSSYQP RKNSGSSMSP QDPYDTCFTL TTPCDGYQFN  120
SESDYMNIES PDPLDYDEYK MKLKLQELER ALLNDNDEDG MFGNSQSLEM DGEWSDPIQN  180
GMLHDSPKES SSSDSSLSSI SNNKEVSQLS PQTPRQLLFE SANAISEGNI EKASTLINEL  240
RQLVSIQGDP SQRIAAYMVE GLAARMAGSG KYLYKALKCK EPPSSDRLAA MQILFEICPC  300
FKFGFMAANG AMIEAFKGER RVHIIDFDIN QGSQYITLIQ TLANVQGKLP HLRLTGVDDP  360
DSVQRHVGGL RIIGQRLEKL AEALKVSFEF HAVASKTSLV NPSMLNRKPG EALIVNFAFQ  420
LHHMPDESVS TVNERDQLLR MAKSLNPKLV TVVEQDVNTN TAPFFPRFTE AYNYYSAVFD  480
SLDVTLPRES QDRLNVEKQC LARDIVNIVA CEGEERIERY EVAGKWRARM MMAGFISCSI  540
TPNVVDMIRI LIKEYCDRYM LKQEAGALHF GWEDKSLIVA SAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6322058325378Protein SCARECROW
5b3h_A6e-6322058324377Protein SCARECROW
5b3h_D6e-6322058324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0267s0240.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164550.0AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302201.20.0scarecrow-like protein 1
RefseqXP_024450876.10.0scarecrow-like protein 1
RefseqXP_024450877.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K2BEX10.0A0A2K2BEX1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07430.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]