PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0267s0240.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 585aa MW: 65220.6 Da PI: 4.8366 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 439.2 | 2.9e-134 | 215 | 584 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 ++lL+e A+a+s+g+ e+a++l+++l++l+s +gdp qR+aay++e+Laar+a+s++ lykal+++e + ss++laa+++++e++ SapurV1A.0267s0240.3.p 215 RQLLFESANAISEGNIEKASTLINELRQLVSIQGDPSQRIAAYMVEGLAARMAGSGKYLYKALKCKEPP---SSDRLAAMQILFEIC 298 689*****************************************************************9...9************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173 P++kf++++aN a+ ea++ge+rvHiiDfdi+qG Q+++L+q+La+ +++ p+lR+Tgv++p+s+ + l+ +g+rL+k+Ae+l+ SapurV1A.0267s0240.3.p 299 PCFKFGFMAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANVQGKLPHLRLTGVDDPDSVqrHVGGLRIIGQRLEKLAEALK 385 ***************************************************************99888999**************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 v+fef++ va++++ +++++L+ kpgEal+Vn+++qlh+++desvs+ +erd++L++ ksl+Pk+v+vveq++++n+++F+ rf+ea SapurV1A.0267s0240.3.p 386 VSFEFHA-VASKTSLVNPSMLNRKPGEALIVNFAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEA 471 *******.7****************************************************************************** PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 +yysa+fdsl+++lpres++r +vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF + +++ ++++ ++ l++++ ++ SapurV1A.0267s0240.3.p 472 YNYYSAVFDSLDVTLPRESQDRLNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFISCSITPNVVDMIRILIKEYCDR 558 *************************************************************************************66 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 y++++e g+l +gW+d++L+++SaW+ SapurV1A.0267s0240.3.p 559 -YMLKQEAGALHFGWEDKSLIVASAWK 584 .*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.167 | 188 | 565 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.9E-132 | 215 | 584 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MSLVGPAELS ATPYGNHKLY SLKGSKDNSG LSAQIFSPDK RQNMYMTDSY SSESYEKYFL 60 DSPTEELIQP SSSGISGNSA PPQGTSSYQP RKNSGSSMSP QDPYDTCFTL TTPCDGYQFN 120 SESDYMNIES PDPLDYDEYK MKLKLQELER ALLNDNDEDG MFGNSQSLEM DGEWSDPIQN 180 GMLHDSPKES SSSDSSLSSI SNNKEVSQLS PQTPRQLLFE SANAISEGNI EKASTLINEL 240 RQLVSIQGDP SQRIAAYMVE GLAARMAGSG KYLYKALKCK EPPSSDRLAA MQILFEICPC 300 FKFGFMAANG AMIEAFKGER RVHIIDFDIN QGSQYITLIQ TLANVQGKLP HLRLTGVDDP 360 DSVQRHVGGL RIIGQRLEKL AEALKVSFEF HAVASKTSLV NPSMLNRKPG EALIVNFAFQ 420 LHHMPDESVS TVNERDQLLR MAKSLNPKLV TVVEQDVNTN TAPFFPRFTE AYNYYSAVFD 480 SLDVTLPRES QDRLNVEKQC LARDIVNIVA CEGEERIERY EVAGKWRARM MMAGFISCSI 540 TPNVVDMIRI LIKEYCDRYM LKQEAGALHF GWEDKSLIVA SAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-63 | 220 | 583 | 25 | 378 | Protein SCARECROW |
5b3h_A | 6e-63 | 220 | 583 | 24 | 377 | Protein SCARECROW |
5b3h_D | 6e-63 | 220 | 583 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0267s0240.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216455 | 0.0 | AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302201.2 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024450876.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024450877.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2K2BEX1 | 0.0 | A0A2K2BEX1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s07430.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0267s0240.3.p |
Publications ? help Back to Top | |||
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