PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0261s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 325aa    MW: 36784.5 Da    PI: 9.8803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0261s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-172065147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg W + Ed+ l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  SapurV1A.0261s0130.1.p 20 RGHWRPAEDDELRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 65
                            899*****************************.***********996 PP
2Myb_DNA-binding58.61.4e-1872115146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  SapurV1A.0261s0130.1.p  72 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 115
                             679*******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.941566IPR017930Myb domain
SMARTSM007175.4E-141968IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2919113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-262173IPR009057Homeodomain-like
CDDcd001674.45E-132364No hitNo description
PfamPF139213.8E-172383No hitNo description
PROSITE profilePS5129427.55367121IPR017930Myb domain
SMARTSM007174.7E-1671119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2174120IPR009057Homeodomain-like
CDDcd001671.31E-783114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEESLAGNSS DDAKSTAFPR GHWRPAEDDE LRQLVEQYGA QNWNSIAEKL QGRSGKSCRL  60
RWFNQLDPRI NRRPFSEEEE ERLLAAHRIH GNKWALIARL FPGRTDNAVK NHWHVIVARK  120
QREQSKLCGK RSYQDNLSES NATSNSSHAR KSRSQEVFNS RIGFEDSRVL EFRNPGNDRI  180
LAISPSGSSP SWNFTPSTIA ASNNSSSAGL SRREGRDDYF NSSLFSTTES SKLISDQSIY  240
RYYMNSSVYG SYRRVVPSPF GYHRLGNHHE NHGMIKKELA SCHNSSTILK NMRATSNHQE  300
KGDHESIKNK EATFIDFLGV GISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31181205107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0261s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707900.0AB970790.1 Populus tremula x Populus tremuloides PtxtMYB158 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999840.10.0PREDICTED: transcription factor MYB23-like
TrEMBLA0A0E4FJ100.0A0A0E4FJ10_POPPZ; MYB transcriptional factor
STRINGPOPTR_0005s20870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-60myb domain protein 52