PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0261s0120.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 588aa    MW: 65860.5 Da    PI: 4.5128
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0261s0120.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.61.1e-1342185872374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++lL+ecA+a+s+g+ e+a al+++l++l+s +gdp qR+aay++e+Laar+a+s+  lyk+l+++e +   s+++laa++++ e++
  SapurV1A.0261s0120.4.p 218 RRLLFECANAISEGNIEKALALINELRQLVSIQGDPPQRIAAYMVEGLAARMAESGIYLYKSLKCKEPP---SDDRLAAMQILLEIC 301
                             689*****************************************************************9...9************** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P++kf++++aN a+ ea++ge+rvHiiDfdi+qG Q+++L+q+La++p++ p+lR+Tgv++pes+  s   l+ +g+rL+k+Aeel+
  SapurV1A.0261s0120.4.p 302 PCFKFGFIAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANQPGKLPNLRLTGVDDPESVqrSVGGLRIIGQRLEKLAEELK 388
                             ***************************************************************9989999***************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             vpfef++ va++++ +++++L++kpgEal+Vn+++qlh+++desvs+ +erd++L++ ksl+Pk+v+vveq++++n+++F+ rf+e 
  SapurV1A.0261s0120.4.p 389 VPFEFHA-VASKTSVVSPSMLNCKPGEALIVNFAYQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEV 474
                             *******.7****************************************************************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                              +yysa+fdsl+a+lpr s++r +vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ ++s ++++ ++ l++++ ++
  SapurV1A.0261s0120.4.p 475 YNYYSAVFDSLDATLPRVSQDRLNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTSCSISPSVVDLIRKLIKQYCDR 561
                             *************************************************************************************66 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              y+++ee g+l++gW+d++Lv++SaW+
  SapurV1A.0261s0120.4.p 562 -YMLKEEVGALLFGWEDKSLVVASAWK 587
                             .*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.057191568IPR005202Transcription factor GRAS
PfamPF035144.0E-132218587IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MSLVGSAELS ARAYESHELY PLMGSNDNSG LSAQMFGPDI RQNMYMTDSY SCESYEKYFL  60
DSPTEEIMQP SSSGISGNSA HPQEASSYQP RKSSGSTMFP QYPYSASFNL TTPCDGYQFI  120
SESDYLDIES PDQLDYDEYK MKLKLRELER ALLEDNEEDE EDVMFGNSQS MEMDAEWSDP  180
IQSEMLHGSP KETSSSDSNL SSISSNKEVS QLSARTPRRL LFECANAISE GNIEKALALI  240
NELRQLVSIQ GDPPQRIAAY MVEGLAARMA ESGIYLYKSL KCKEPPSDDR LAAMQILLEI  300
CPCFKFGFIA ANGAMIEAFK GERRVHIIDF DINQGSQYIT LIQTLANQPG KLPNLRLTGV  360
DDPESVQRSV GGLRIIGQRL EKLAEELKVP FEFHAVASKT SVVSPSMLNC KPGEALIVNF  420
AYQLHHMPDE SVSTVNERDQ LLRMAKSLNP KLVTVVEQDV NTNTAPFFPR FTEVYNYYSA  480
VFDSLDATLP RVSQDRLNVE KQCLARDIVN IVACEGEERI ERYEVAGKWR ARMMMAGFTS  540
CSISPSVVDL IRKLIKQYCD RYMLKEEVGA LLFGWEDKSL VVASAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6422358625378Protein SCARECROW
5b3h_A1e-6422358624377Protein SCARECROW
5b3h_D1e-6422358624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0261s0120.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164550.0AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306674.30.0scarecrow-like protein 1
RefseqXP_024457342.10.0scarecrow-like protein 1
RefseqXP_024457343.10.0scarecrow-like protein 1
RefseqXP_024457344.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K2AIQ00.0A0A2K2AIQ0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s20890.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]