PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0254s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 92aa    MW: 10717.9 Da    PI: 7.5298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0254s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.5e-121155244
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             +WT+e ++l+ +a +++ ++   +W+tIa+ +g   t++++k r+
  SapurV1A.0254s0180.1.p 11 SNWTAEQHKLFENALAKYDKDtadRWRTIAKLVG-ETTEEEVKRRY 55
                            58********************************.99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-8961IPR001005SANT/Myb domain
PROSITE profilePS500906.8761159IPR017877Myb-like domain
SuperFamilySSF466898.97E-121166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-51259IPR009057Homeodomain-like
CDDcd001678.35E-71255No hitNo description
PfamPF002493.5E-91255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MKSRSFRQPS SNWTAEQHKL FENALAKYDK DTADRWRTIA KLVGETTEEE VKRRYDILLE  60
DLKSIESDKV PLPNYKNEGS RRGNISSEEE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-24591386RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0254s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025785.11e-41PREDICTED: protein RADIALIS-like 4
RefseqXP_011025786.11e-41PREDICTED: protein RADIALIS-like 4
SwissprotF4JVB84e-26RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2K1ZN839e-40A0A2K1ZN83_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12860.12e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-28RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]