PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0248s0190.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 473aa MW: 51003.5 Da PI: 8.4932 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.4 | 8e-16 | 298 | 343 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq SapurV1A.0248s0190.2.p 298 HNQSERKRRDKINQRMKTLQKLVPSS-----SKTDKASMLDEVIEYLKQLQ 343 9************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.587 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.77E-19 | 296 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-13 | 298 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.25E-17 | 298 | 347 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-18 | 298 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-18 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MSHQCVPSWE VDDNRATAPK LSLRSHSNSS AVPDVPMLGY EVAELTWENG QIAMHGLGPP 60 RVPSKPVAST SPSKYTWDKP RASGTLESIV NQATCVPQCN KAPLGNGTGS DHDLVPWFNH 120 HKASASATKT MDAFVPCSNR SGQDRTTHVI DSSPAGLGTC VVGCSTRVGS CSAPTATQDE 180 DGLLTRKRAR VARVPAPPEW SRDQSVNHSA TFGKKDSQQM TVDSCEREFG VGLTSTSFGS 240 QENTSSGTNP CTRTLTADEN DSVCHSRPQR GEGDEDDKKK ANGKSSVSTK RSRAAAIHNQ 300 SERKRRDKIN QRMKTLQKLV PSSSKTDKAS MLDEVIEYLK QLQAQVQMMS RMNLQPMMLP 360 LALQQQLQMS MMAPMSMGMA GMGLGMGVMD MNTMAARSSM TGIPPVLHPN AFIPMATWDG 420 SGGHDRLQTT AADPLSAFLA CQSQPMTMDA YSRMAAMYQQ LHQQPPASNS KG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 301 | 306 | ERKRRD |
2 | 302 | 307 | RKRRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0248s0190.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320711.2 | 0.0 | transcription factor UNE10 | ||||
Swissprot | Q8GZ38 | 1e-109 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | B9IBW9 | 0.0 | B9IBW9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s06190.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-107 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0248s0190.2.p |
Publications ? help Back to Top | |||
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