PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0248s0190.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 473aa MW: 51003.5 Da PI: 8.4932

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0248s0190.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8e-16	298	343	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq SapurV1A.0248s0190.1.p 298 HNQSERKRRDKINQRMKTLQKLVPSS-----SKTDKASMLDEVIEYLKQLQ 343 9**********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.587	293	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-19	296	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-13	298	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.25E-17	298	347	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-18	298	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-18	299	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MSHQCVPSWE VDDNRATAPK LSLRSHSNSS AVPDVPMLGY EVAELTWENG QIAMHGLGPP 60 RVPSKPVAST SPSKYTWDKP RASGTLESIV NQATCVPQCN KAPLGNGTGS DHDLVPWFNH 120 HKASASATKT MDAFVPCSNR SGQDRTTHVI DSSPAGLGTC VVGCSTRVGS CSAPTATQDE 180 DGLLTRKRAR VARVPAPPEW SRDQSVNHSA TFGKKDSQQM TVDSCEREFG VGLTSTSFGS 240 QENTSSGTNP CTRTLTADEN DSVCHSRPQR GEGDEDDKKK ANGKSSVSTK RSRAAAIHNQ 300 SERKRRDKIN QRMKTLQKLV PSSSKTDKAS MLDEVIEYLK QLQAQVQMMS RMNLQPMMLP 360 LALQQQLQMS MMAPMSMGMA GMGLGMGVMD MNTMAARSSM TGIPPVLHPN AFIPMATWDG 420 SGGHDRLQTT AADPLSAFLA CQSQPMTMDA YSRMAAMYQQ LHQQPPASNS KG*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MSHQCVPSWE VDDNRATAPK LSLRSHSNSS AVPDVPMLGY EVAELTWENG QIAMHGLGPP  60
RVPSKPVAST SPSKYTWDKP RASGTLESIV NQATCVPQCN KAPLGNGTGS DHDLVPWFNH  120
HKASASATKT MDAFVPCSNR SGQDRTTHVI DSSPAGLGTC VVGCSTRVGS CSAPTATQDE  180
DGLLTRKRAR VARVPAPPEW SRDQSVNHSA TFGKKDSQQM TVDSCEREFG VGLTSTSFGS  240
QENTSSGTNP CTRTLTADEN DSVCHSRPQR GEGDEDDKKK ANGKSSVSTK RSRAAAIHNQ  300
SERKRRDKIN QRMKTLQKLV PSSSKTDKAS MLDEVIEYLK QLQAQVQMMS RMNLQPMMLP  360
LALQQQLQMS MMAPMSMGMA GMGLGMGVMD MNTMAARSSM TGIPPVLHPN AFIPMATWDG  420
SGGHDRLQTT AADPLSAFLA CQSQPMTMDA YSRMAAMYQQ LHQQPPASNS KG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	306	ERKRRD
2	302	307	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0248s0190.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002320711.2	0.0	transcription factor UNE10
Swissprot	Q8GZ38	1e-109	UNE10_ARATH; Transcription factor UNE10
TrEMBL	B9IBW9	0.0	B9IBW9_POPTR; Uncharacterized protein
STRING	POPTR_0014s06190.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5676	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-107	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0248s0190.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]