PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0247s0220.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 314aa MW: 34514.4 Da PI: 8.2419 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.4e-14 | 83 | 127 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky SapurV1A.0247s0220.4.p 83 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 127 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-18 | 77 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.094 | 78 | 132 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-18 | 81 | 130 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.0E-7 | 81 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-12 | 83 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-9 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MPFTRPVFPS SPFCTQFHAL EKEKLCMIMS TNLSSSTSGE GAGAEANPGG PAHSMATPPP 60 AATASSDGSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI 120 RSHAQKYFLK IQKNGTVAHL PPPRPKRKAS HPYPQKASKI VLVPLPASMA YPSSLNTFTP 180 EYAPWDETSM LITSPTRKIM LSQDELNSFH GAEADIGTKG VSRISNNTVG GLGTSGTLWS 240 AEMPKQATVL HGIPDFGEVY SFIGSVFDME TKGHVKKLNE MDPINFQTVL LLMRNLTVNL 300 SSPDFEPFWE LLP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0247s0220.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148355 | 0.0 | EF148355.1 Populus trichocarpa x Populus deltoides clone WS01313_L11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442939.1 | 1e-163 | protein REVEILLE 8 isoform X3 | ||||
Swissprot | Q8RWU3 | 1e-121 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A3N7HXM2 | 1e-161 | A0A3N7HXM2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s08470.1 | 1e-161 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-120 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0247s0220.4.p |
Publications ? help Back to Top | |||
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