PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0247s0220.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 336aa MW: 36829 Da PI: 8.7566

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0247s0220.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.8e-14	83	127	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky SapurV1A.0247s0220.2.p 83 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 127 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-18	77	133	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.094	78	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-7	81	133	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-18	81	130	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-11	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-12	83	127	IPR001005	SANT/Myb domain
CDD	cd00167	3.05E-9	85	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MPFTRPVFPS SPFCTQFHAL EKEKLCMIMS TNLSSSTSGE GAGAEANPGG PAHSMATPPP 60 AATASSDGSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI 120 RSHAQKYFLK IQKNGTVAHL PPPRPKRKAS HPYPQKASKI VLVPLPASMA YPSSLNTFTP 180 EYAPWDETSM LITSPTRKIM LSQDELNSFH GAEADIGTKG VSRISNNTVG GLGTSGTLWS 240 AEMPKQATVL HGIPDFGEVY SFIGSVFDME TKGHVKKLNE MDPINFQTVL LLMRNLTVNL 300 SSPDFEPFRK VMSSYDVNTK TVGVTTLNQI NDIAC*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0247s0220.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148355	0.0	EF148355.1 Populus trichocarpa x Populus deltoides clone WS01313_L11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024442939.1	0.0	protein REVEILLE 8 isoform X3
Swissprot	Q8RWU3	1e-126	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A3N7HXM2	1e-180	A0A3N7HXM2_POPTR; Uncharacterized protein
STRING	POPTR_0016s08470.1	1e-180	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-125	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0247s0220.2.p

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]