PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0247s0170.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 488aa    MW: 53093.6 Da    PI: 8.2672
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0247s0170.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17161210155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SapurV1A.0247s0170.5.p 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210
                             78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9161210IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-16161220IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-17162219IPR001471AP2/ERF domain
SMARTSM003805.3E-33162224IPR001471AP2/ERF domain
CDDcd000189.83E-12162220No hitNo description
PROSITE profilePS5103217.794162218IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-6253297IPR016177DNA-binding domain
CDDcd000182.55E-13253298No hitNo description
SMARTSM003805.3E-13254302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MLDLNLTAVS GDSSTTVKRN NNSNKKILEL SNSPMESSGS FNSSSVVNAD GCGDEDSCSN  60
GEVFALNFSI LANESSSKKT VYSNNNDDDH SDRGDRTIQL FPVECGTKNA GGGSTSSPAV  120
QMQRMDLGGS LNYGVPPEQG IGAQQQKPVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNVS DYDEDIKQMS NFTKEEFVHI  240
LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKAYD KAAIKCNGRE AVTNFEPSTY  300
EVEMLSEPNS GVTYTDGNQN LDLNLGIAPP DTSDILKVNS NVGGFYFHSG WDGVSTDRAP  360
KFLNSGSATM KNQLPNGPGV TSVHPPPMWD GLNHRVFPIY EERAIEKRME VDSFPNWTRQ  420
TQVPYGGGAN ALPVFSTAAS SGFASSAIMA PSAAAGQLHF SSSTTLHHRN SSSVTNPSNI  480
SQFYCRS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0247s0170.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443792.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK038e-96RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2K1XCQ80.0A0A2K1XCQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.13e-94related to AP2.7